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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaacctcttaatttcactgtgcatggtgtagatttgttgttttagtgatcccaggttgaagaaatttccagtgatgattttgtatcaatcggtgttttttgttacttgtgtatcctagTGACTTTCAAGACATATTTGATGTGGATCATTTTATCGCGTCCTTTAGAGATGAAGTGCGGATATTGAAAGAGTTGCCTCCCAGACTCAACATGAAAGTG

Basic information

species Glycine max
transcript GLYMA12G19960.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193340916|gb|FK307193.1|FK307193
EST:     CACTTATAGTTCCTGAACTGGATTAAAACATCCTTTTGGGCTGATCCCAG                         TGACTTTCAAGACTATTATTTGATGTGGATCATTTTATCGCGTCCTTTAGA
genomic: CACTTATAGTTCCTGAACTGGA-TAAAACATCCTTTTGGGCTGATCCCAGgtgaacctct ... tgtatcctagTGACTTTCAAGAC-A-TATTTGATGTGGATCATTTTATCGCGTCCTTTAGA
EST: gi|6746920|gb|AW317376.1|AW317376
EST:     ACACTTATAGTTCCTGAACTGGATAAAACATCCTTTTGGGCTGATCCCAG                         TGACTGTCAAGACATATTTGATGTGGATCATTTTATCGCGTCCTTTAGAGA
genomic: ACACTTATAGTTCCTGAACTGGATAAAACATCCTTTTGGGCTGATCCCAGgtgaacctct ... tgtatcctagTGACTTTCAAGACATATTTGATGTGGATCATTTTATCGCGTCCTTTAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttccagtgatgattttgtatcaatcggtgttttttgttacttgtgtatcctagTGACTTTCAAGACATATTTGATGTGGATCATTTTATCGCGTCCTTTAGAGATGAAGTGCGGATATTGAAAGAGTTGCCTCCCAGACTCAACATGAAAGTG
                               ttttttgtta  TA-rich tract