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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaggatgaactatgatacctcccttcacttttcccctttaaataaaaggaaaacatacacaggaaaaagtttgcttattttaaccttcttgctgtgatattatatctatattccttatggcatgttttttaatttagttaactcaattggcttaattttcactggtggcttttattatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCCCGGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGG

Basic information

species Glycine max
transcript GLYMA12G15470.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G15470.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 3'ss of exon 10
gtgagtaggatgaactatgatacctcccttcacttttcccctttaaataaaaggaaaacatacacaggaaaaagtttgcttat-tttaaccttcttgctgtgatattatatctatattccttatggcatgtt--ttttaatttagttaactcaattggcttaattttcactggtggcttttattatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCCCGGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGG
                                                                               | || ||||  | |  | | |||  |||  |   |||  ||  ||| ||  ||  | || ||||  ||    | ||  |||||   |||| |  ||  | |  ||||  ||||| || ||||||||||||||||||||||||||||| || || || ||||| ||  | || || || |||||| | || ||||| |||||||||||||| |
-------------------------------------------------------------------------------tcatgtttagtcgttattcagtgtaattgca---atag-ccagatgacaacttaatattgattttttt--tccgatgtgctta---ttcatt--tgaatatctttatg-cagCTTGATGCATGTGCACATCCTTTCTTTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCACCACTATTCAACTTCAAACACG

upper sequence: GLYMA12G15470.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 3'ss of exon 10
gtgagtaggatgaactatgatacctcccttcacttttcccctttaaataaaaggaaaacatacacaggaaaaagtttgcttattttaaccttcttgctgtgatattatatc-tatattccttatggcatgttttttaatttagttaactcaattggcttaattttcactggtggcttttattatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCCCGGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGG
                                                                               || ||| || ||| |   |  | |   | |   |||| ||  ||  |||   |  |  |  |       ||||   |||||   ||   |||| | || |||     ||||| || |||||||||||| | |||||||||||||| || || || ||||| || || || ||||| |||||| | || || || ||||||||||| || |
-----------------------------------------------------------------------------aattgtttaaagcttatgctttagctggaaaacagtataatctctaaagcagcatgctggacatt-----ttcaaagagcttagcatt---tggttgattatatg----cagCTTGACGCATGTGCACATTCCTTCTTTGATGAGCTACGAGAGCCCAATGCACGCCTGCCAAATGGTCGTCCATTCCCTCCTCTGTTCAACTTCAAGCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208176808|gb|GD975235.1|GD975235
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|207775877|gb|GD748652.1|GD748652
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|16996079|gb|BM085451.1|BM085451
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|208272767|gb|GE066245.1|GE066245
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATG
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATG
EST: gi|254341726|gb|GR852863.1|GR852863
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|193713415|gb|FK651922.1|FK651922
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|207768114|gb|GD739434.1|GD739434
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|193532704|gb|FK489794.1|FK489794
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACC
EST: gi|192301990|gb|FG995160.1|FG995160
EST:     GCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTCTGATGAGCTTCGCGAACCAAATGCC
genomic: GCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|31306112|gb|CD391315.1|CD391315
EST:     GTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: GTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|208260673|gb|GE059429.1|GE059429
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGA
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGA
EST: gi|193404932|gb|FK373359.1|FK373359
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAAC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAAC
EST: gi|193429319|gb|FK398495.1|FK398495
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|15337416|gb|BI498072.1|BI498072
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|254322923|gb|GR835638.1|GR835638
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|7685735|gb|AW756383.1|AW756383
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|208335272|gb|GE133329.1|GE133329
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATG
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATG
EST: gi|193451281|gb|FK417869.1|FK417869
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTGCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAGCCAAATG
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATG
EST: gi|193650766|gb|FK599893.1|FK599893
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|48575547|gb|CO036458.1|CO036458
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|22525206|gb|BU084017.1|BU084017
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|193518950|gb|FK475793.1|FK475793
EST:     CACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: CACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|208274362|gb|GE072446.1|GE072446
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC
EST: gi|19935688|gb|BQ080542.1|BQ080542
EST:     ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCG                         CTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCCCGAAACAAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTCCGCTGCACTGCGgtgagtagga ... attatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatttagttaactcaattggcttaattttcactggtggcttttattatttcagCTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGCGAACCAAATGCCCGGCTACCTAATGGCCGTCCACTGCCCCCACTTTTCAACTTCAAACAGG
                                        cttttatt  CT-rich tract
                                         ttttattatttca  TA-rich tract