1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ggaatgcttatttttccacctgtggcttctctccttccctttgtctaatatttagagcaattgcattattacagatgccttctgtatctttattttgtagGTTTGCAGGTACCGTCTAATTGAAGATGAGTTTAATTCTCCAAACCTACCTGAGTTACAGAAGTACCTCACTGATGAGGATTACAG
species | Glycine max |
transcript | GLYMA12G10540.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTTCGAAGTCAATAATTAAAAGCTTCTGTAAAAATGCAAGAAAACTCAAA GTTTGCAGGTACCTTCTAATTGAAGATGAGTTTAATTCTCCAAACCTACCTEST: gi|58015531|gb|CX702273.1|CX702273
genomic: TTTCGAAGTCAATAATTAAAAGCTTCTGTAAAAATGCAAGAAAACTCAAAgtaagtttgt ... tattttgtagGTTTGCAGGTACCGTCTAATTGAAGATGAGTTTAATTCTCCAAACCTACCT
EST: TTTCGAAGTCAATAATTAAAAGCTTCTGTAAAAATGCAAGAAAACTCAAA GTTTGCAGGTACCTTCTAATTGAAGATGAGTTTAATTCTCCAAACCTACCTEST: gi|207795467|gb|GD766828.1|GD766828
genomic: TTTCGAAGTCAATAATTAAAAGCTTCTGTAAAAATGCAAGAAAACTCAAAgtaagtttgt ... tattttgtagGTTTGCAGGTACCGTCTAATTGAAGATGAGTTTAATTCTCCAAACCTACCT
EST: TTTCGAAGTCAATAATTAAAAGCTTCTGTAAAAATGCAAGAAAACTCAAA GTTTGCAGGTACCGTCTAATTGAAGATGAGTTTAATTCTCCAAACCTACCT
genomic: TTTCGAAGTCAATAATTAAAAGCTTCTGTAAAAATGCAAGAAAACTCAAAgtaagtttgt ... tattttgtagGTTTGCAGGTACCGTCTAATTGAAGATGAGTTTAATTCTCCAAACCTACCT
taatatttagagcaattgcattattacagatgccttctgtatctttattttgtagGTTTGCAGGTACCGTCTAATTGAAGATGAGTTTAATTCTCCAAACCTACCTGAGTTACAGAAGTACCTCACTGATGAGGATTACAG
gtctaat putative branch site (score: 3)
ccttctgtatcttt putative PPT
tatctttattttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaatgcttatttttccacctgtggcttctctccttccctttgtctaatatttagagcaattgcattattacagatgccttctgtatctttattttgtagGTTTGCAGGTACCGTCTAATTGAAGATGAGTTTAATTCTCCAAACCTACCTGAGTTACAGAAGTACCTCACTGATGAGGATTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
-gaatgct
- - - - - - -ttccacc
- - - - - - - - - - - - gcttctc
- - - - - - - - - - - - - - - - -cttccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatta