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gtatcttcttctccaaactctacaatatattcttagtttgtaaacaaaaattttaccttagatgaggatggtaaaataaaggtgtggcaattctaggaaatatagggtagataaacttaggttggatggttatagacttgtacagtagtactaagatgaatcttttcactgtctttgtagATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAAAGAACTGGCTGCTAGGGAAACCTGGCATGATCTTTGCTATATTAATGC
species | Glycine max |
transcript | GLYMA12G10270.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATG ATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAEST: gi|24206258|gb|BU965511.1|BU965511
genomic: AAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGgtatcttctt ... gtctttgtagATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACA
EST: AAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATG ATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAEST: gi|23725902|gb|BU760924.1|BU760924
genomic: AAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGgtatcttctt ... gtctttgtagATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACA
EST: AAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATG ATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAEST: gi|14206224|gb|BG839902.1|BG839902
genomic: AAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGgtatcttctt ... gtctttgtagATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACA
EST: AGCTCAGCAAGCCATGTCATCCCTTATCACCGGAGAGCTTGGATAAAATG ATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAEST: gi|120531623|gb|EH259756.1|EH259756
genomic: AGCTCAGCAAGCCATGTCAT-CCTTATCACCGGAGAGCTTGGATAAAATGgtatcttctt ... gtctttgtagATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACA
EST: AAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATG ATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACA
genomic: AAGCTCAGCAAGCCATGTCATCCTTATCACCGGAGAGCTTGGATAAAATGgtatcttctt ... gtctttgtagATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACA
atggttatagacttgtacagtagtactaagatgaatcttttcactgtctttgtagATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAAAGAACTGGCTGCTAGGGAAACCTGGCATGATCTTTGCTATATTAATGC
tcttttcactgtcttt CT-rich tract
aatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcttcttctccaaactctacaatatattcttagtttgtaaacaaaaattttaccttagatgaggatggtaaaataaaggtgtggcaattctaggaaatatagggtagataaacttaggttggatggttatagacttgtacagtagtactaagatgaatcttttcactgtctttgtagATGCTTTGGGCAGACAGGATTCAAAGAGGAGTTGAATCTGCGAGAAAGACAAAGAACTGGCTGCTAGGGAAACCTGGCATGATCTTTGCTATATTAATGC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT