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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacccaaatttaaactagatgttgacagaatatactatagtttgtgctattgctattatcaataatttgcatttgctctaacacttggtatgttttgaattttcatgaatgttgagtactaaccgagttatgttctccactttgcagTCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCT

Basic information

species Glycine max
transcript GLYMA12G07260.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07260.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv06s0004g02890.t01 (Vitis vinifera), 3'ss of exon 10
gtaaacccaaatttaaactagatgttgacagaatatactatagtttgtgctattgctattatcaataatttgcatttgctctaacacttggtatgttttgaattttcatgaatgttgagtactaaccgagttatgttctccactttgcagTCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCT
                                       ||        |  ||  || |  ||||   |    |      |   |    | ||  |   |||    || ||  |  |||        |  | |||| | |  ||  ||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| || 
--------------------------------------catgaaagaaaccctttttaat-ccaatgcatcatgtccatattgttataaagcataatgcaaat----ataaacttatagtg------aaactctgtttttc-tttgacagTCTGATGGGTTCCCCACACTTCTATTCTTCCCAGCAGGAAACAAGAGTTCTGATCCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396998|gb|EV266871.1|EV266871
EST:     TTGTTATAGCCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAG                         TCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCT
genomic: TTGTTATAGCCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGgtaaacccaa ... cactttgcagTCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCT
EST: gi|31457199|gb|CD399227.1|CD399227
EST:     ATGGACGGAACAACAAATGAGCATCCCAGGGCCAAG                         TCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCT
genomic: ATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGgtaaacccaa ... cactttgcagTCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCT
EST: gi|15814196|gb|BI786471.1|BI786471
EST:     CCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAG                         TCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCT
genomic: CCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGgtaaacccaa ... cactttgcagTCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCT
EST: gi|15814100|gb|BI786375.1|BI786375
EST:     CCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAG                         TCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCT
genomic: CCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGgtaaacccaa ... cactttgcagTCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgaattttcatgaatgttgagtactaaccgagttatgttctccactttgcagTCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCT
                        tactaac  putative branch site (score: 0)
                                        ttctccacttt  putative PPT
     aattttcat  TA-rich tract