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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatattacaactggatcatttgagctctgatttttctgccaaatactaatatgtgttgatactttattatttcagGCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG

Basic information

species Glycine max
transcript GLYMA12G06980.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193521072|gb|FK478125.1|FK478125
EST:     ACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAG                         GCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG
genomic: ACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGgttatattac ... attatttcagGCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG
EST: gi|208182321|gb|GD980334.1|GD980334
EST:     ACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAG                         GCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG
genomic: ACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGgttatattac ... attatttcagGCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG
EST: gi|208205622|gb|GE006621.1|GE006621
EST:     ACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAG                         GCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG
genomic: ACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGgttatattac ... attatttcagGCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG
EST: gi|209703510|gb|BW656548.1|BW656548
EST:     ACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAG                         GCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG
genomic: ACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGgttatattac ... attatttcagGCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagctctgatttttctgccaaatactaatatgtgttgatactttattatttcagGCGAATTTACTATGATTGAACTTGCTGAGAATGTGAAAGAG
                                         ctttatt  CT-rich tract
                                   ttgatactttattatt  TA-rich tract