1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatatattatacttgtttctcttttgagtgttgttatcttgattcaagtactaggtgtgattgactatgatcatatatacgcttgaaatttattagGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAG
species | Glycine max |
transcript | GLYMA12G06980.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATG GTTGATGGACTTATACGTCTAATGGAEST: gi|193521072|gb|FK478125.1|FK478125
genomic: TCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGgtatatatta ... aatttattagGTTGATGGACTTATACGTCTAATGGA
EST: TTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATG GTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACEST: gi|208182321|gb|GD980334.1|GD980334
genomic: TTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGgtatatatta ... aatttattagGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAAC
EST: AACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATG GTTGATTGGACTTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAEST: gi|208205622|gb|GE006621.1|GE006621
genomic: AACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGgtatatatta ... aatttattagGTTGA-TGGAC-TTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCA
EST: AACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATG GTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACEST: gi|209703510|gb|BW656548.1|BW656548
genomic: AACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGgtatatatta ... aatttattagGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAAC
EST: TCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATG GTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAAC
genomic: TCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGgtatatatta ... aatttattagGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAAC
attcaagtactaggtgtgattgactatgatcatatatacgcttgaaatttattagGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAG
gattgac putative branch site (score: 3)
ttgaaatttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatattatacttgtttctcttttgagtgttgttatcttgattcaagtactaggtgtgattgactatgatcatatatacgcttgaaatttattagGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG