1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agaaaattgctgtgactttgttatattttattgttttaagattgtttgggattttcattcttttagataaaattcccgatgctaagttaccttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTCAAAATTATTCTAGGGAAAGAAGAAGCAAGCGTTCGAAGCGGAAGCGTG
species | Glycine max |
transcript | GLYMA12G06920.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAG GGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTEST: gi|208327739|gb|GE119825.1|GE119825
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
EST: TTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAG GGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAAGTTGGCGEST: gi|11687967|gb|BF595643.1|BF595643
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAA-GTTGGCG
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCATATACAGAAAGTGACAATAAG GGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTEST: gi|13790720|gb|BG653311.1|BG653311
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAG GGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTEST: gi|11688332|gb|BF596008.1|BF596008
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAG GGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTEST: gi|31469715|gb|CD411743.1|CD411743
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACTATAAG GGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTEST: gi|8403293|gb|BE058927.1|BE058927
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAG GGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTEST: gi|23063997|gb|BU578770.1|BU578770
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAG GGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTEST: gi|7926340|gb|AW832366.1|AW832366
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAG G-A-AG-A---TGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTEST: gi|31305561|gb|CD390764.1|CD390764
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACCATAAG GGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTEST: gi|22930126|gb|BU547265.1|BU547265
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAG GGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTEST: gi|31306673|gb|CD391876.1|CD391876
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACCATAAG GGACCGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTEST: gi|120531321|gb|EH259454.1|EH259454
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACCATAAG GGACAGGAAGATGCAGAAGAAGCATACGCTTTTAAAGTTGGCGAAGAGGTTEST: gi|20498706|gb|BQ273636.1|BQ273636
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAG GGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTEST: gi|10844370|gb|BF067669.1|BF067669
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAG GGACAGGAAGATGCATAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTEST: gi|120493132|gb|EH221299.1|EH221299
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGT
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAG GGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTEST: gi|31467838|gb|CD409866.1|CD409866
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
EST: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAG GTACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
genomic: CTTCTGTTTCTGCTTCTGATGATGGCTCAGATACAGAAAGTGACAATAAGgtaagtatta ... cttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTT
ttgggattttcattcttttagataaaattcccgatgctaagttaccttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTCAAAATTATTCTAGGGAAAGAAGAAGCAAGCGTTCGAAGCGGAAGCGTG
ttacctt CT-rich tract
attttcattcttttag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaaattgctgtgactttgttatattttattgttttaagattgtttgggattttcattcttttagataaaattcccgatgctaagttaccttgttacagGGACAGGAAGATGCAGAAGAAGCATACGCTTCTAAAGTTGGCGAAGAGGTTCAAAATTATTCTAGGGAAAGAAGAAGCAAGCGTTCGAAGCGGAAGCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - ttgctgt
- - - - - - -gactttg
- - - - - - - - - - - - - - - - - - - - - -gtttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgatgc