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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtaattttggttttgtcctttgccatttactttgtgcgcttctggatttttatctttaattgttaatttttctctctatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAATATATTCGTTATATTTATAACAGAGTACATCTTGAGAATGCGACTGTTA

Basic information

species Glycine max
transcript GLYMA12G04820.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G04820.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 10
gtagtaattttggt--tttgtcctttgccattta----ctttgtgcgcttctggatttttatctttaa-----ttgttaatttttctctctatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAATATATTCGTTATATTTATAACAGAGTACATCTTGAGAATGCGACTGTTA
|||| | ||||     |||    | |   ||| |    | | |||    | |   | |||  || ||       |  | | |||| | ||  |   | ||||||| || || |||||  ||||||| |||||||| || || |||||||||||||| || ||||| ||||||||||||  |||||||||||| |||||| 
gtagcatttttctccatttaatatctttaattcaagctcatggtgtttatttacttctttgactatagatagtctactcaattttatttccttaattcagATACTCCATTTTCTGGGGATTGAAGGGCCAAAAACCTCAGATCCCAGCAAATATATACGGTATATCTATAACAGAGTAATTCTTGAGAATGCAACTGTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208328438|gb|GE129666.1|GE129666
EST:     TTGAAGATTGTTGAATTCACTTATTTGTCCACACAG                         ATACTGCACTTCCTGGGAGTTGAAGGACCAAAAA
genomic: TTGAAGATTG-TGAATTCACTTATTTGTCCACACAGgtagtaattt ... tatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAA
EST: gi|208097811|gb|GD892608.1|GD892608
EST:     ACCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAG                         ATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAA
genomic: ATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGgtagtaattt ... tatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAA
EST: gi|193314799|gb|FK280963.1|FK280963
EST:     ATCTTTGTGAGTTTATTGAAGGTTGTGAATTCACTTATTTGTCCACACAG                         ATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAA
genomic: ATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGgtagtaattt ... tatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAA
EST: gi|208300498|gb|GE100263.1|GE100263
EST:     ATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAG                         ATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTT
genomic: ATCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGgtagtaattt ... tatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgcgcttctggatttttatctttaattgttaatttttctctctatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAATATATTCGTTATATTTATAACAGAGTACATCTTGAGAATGCGACTGTTA
                             tgttaat  putative branch site (score: 3)
                               ttaatttttctctcta  CT-rich tract
              atttttatctttaatt  TA-rich tract