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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccaaatttttttatatgaagtaacctttagatatgcatttttttttatatatatgttttgtgtattctgttagaagttgatctttggagtctttaacagATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATAGTTATTCTGGCTTGTGTGCAACAGTAGAATCTAGTGAAG

Basic information

species Glycine max
transcript GLYMA11G37760.3
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258424|gb|BG881332.1|BG881332
EST:     AAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGTTGGGATTCAAATTAG                         ATGTGGGACTTGAACCCTAATGGGACCCTGGTGAATA
genomic: AAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGTTGGGATTCGAATCAGgtatggtgta ... tctttaacagATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATA
EST: gi|17519483|gb|BM188525.1|BM188525
EST:     AAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGTTGGGATTCGAATCAG                         ATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATAGTTATTCTGGCTTG
genomic: AAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGTTGGGATTCGAATCAGgtatggtgta ... tctttaacagATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATAGTTATTCTGGCTTG
EST: gi|8827962|gb|BE211692.1|BE211692
EST:     AAGAGTTCAAGAGAGGGACATTNTCTCCCTGCAGTTGGGATTCGAATCAG                         ATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATAGT
genomic: AAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGTTGGGATTCGAATCAGgtatggtgta ... tctttaacagATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatatatgttttgtgtattctgttagaagttgatctttggagtctttaacagATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATAGTTATTCTGGCTTGTGTGCAACAGTAGAATCTAGTGAAG
                              agttgat  putative branch site (score: 5)
                                             tcttt  putative PPT
     tatatgtttt  TA-rich tract