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...actttagctgatttggatggaacttgcatttaaatgttgtatctgagctcctttatttagaagatagtaaaaataatctagaaattggttccatatatagGTTCGACGATTGCCAGTCGGAGATGGGATTTGGATAGCGCGCCATAAAACTCTGAACAGTGAATATGTGTTGGATTTTATTGTTGAGAGGAAGAAAACTA
species | Glycine max |
transcript | GLYMA11G20970.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCAGGAAAATTATTGAGAATATCCGCAGCCAGTTCAAAATCCAGATAGAG GTTCGACGATTGCCAGTCGGAGATGGGATTTGGATAGCGCGCCATAAAACTEST: gi|51343470|gb|CO984203.1|CO984203
genomic: CCAGGAAAATTATTGAGAATATCCGCAGCCAGTTCAAAATCCAGATAGAGgtatgtttga ... ccatatatagGTTCGACGATTGCCAGTCGGAGATGGGATTTGGATAGCGCGCCATAAAACT
EST: GCAGCCAGTTCAAAATCCAGATAGAG NNNCGACGATTGCCAGTCGGAGATGGGATTTGGATAGCGCGCCATAAANNN
genomic: GCAGCCAGTTCAAAATCCAGATAGAGgtatgtttga ... ccatatatagGTTCGACGATTGCCAGTCGGAGATGGGATTTGGATAGCGCGCCATAAAACT
agctcctttatttagaagatagtaaaaataatctagaaattggttccatatatagGTTCGACGATTGCCAGTCGGAGATGGGATTTGGATAGCGCGCCATAAAACTCTGAACAGTGAATATGTGTTGGATTTTATTGTTGAGAGGAAGAAAACTA
tttatttagaagatag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actttagctgatttggatggaacttgcatttaaatgttgtatctgagctcctttatttagaagatagtaaaaataatctagaaattggttccatatatagGTTCGACGATTGCCAGTCGGAGATGGGATTTGGATAGCGCGCCATAAAACTCTGAACAGTGAATATGTGTTGGATTTTATTGTTGAGAGGAAGAAAACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - gctgatt
- - - - - - -tggatgg
- - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa