1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacttactccttccatatatcatctcttcatttgcattctcacacgatcttatatttcagcatccgtgcatgtgcacaacacgacatacacacgtgaagaccaagccattctcctgcttctaatatgcacatgtaatttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAAAAATAATCTTGTACAGCTAACTGAGGCTAGTGTAAGCTGCTGCTGCTT
species | Glycine max |
transcript | GLYMA11G14500.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTATGGAAAACACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|58014239|gb|CX700981.1|CX700981
genomic: CTATGGAAAGCACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAGCACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|12690716|gb|BG157052.1|BG157052
genomic: CTATGGAAAGCACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAGCACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|6725243|gb|AW309642.1|AW309642
genomic: CTATGGAAAGCACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAGCACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|207711403|gb|GD693557.1|GD693557
genomic: CTATGGAAAGCACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CGTGTAGAAAAACTTGTTGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|193585450|gb|FK539465.1|FK539465
genomic: CGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAGCACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAEST: gi|58021002|gb|CX707744.1|CX707744
genomic: CTATGGAAAGCACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
EST: CTATGGAAAGCACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAG AAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
genomic: CTATGGAAAGCACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGgtacttactc ... tttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGA
acgtgaagaccaagccattctcctgcttctaatatgcacatgtaatttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAAAAATAATCTTGTACAGCTAACTGAGGCTAGTGTAAGCTGCTGCTGCTT
ttctaat putative branch site (score: 2)
ttctaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttactccttccatatatcatctcttcatttgcattctcacacgatcttatatttcagcatccgtgcatgtgcacaacacgacatacacacgtgaagaccaagccattctcctgcttctaatatgcacatgtaatttgttgcagAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAGGTGGCTTAGAAAAATAATCTTGTACAGCTAACTGAGGCTAGTGTAAGCTGCTGCTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT