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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtaattttggttttgtcctttgccatttactttgtgtgcttctggatttttatcttttggtaatttttctctctatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAATATATTCGTTATATTTATAACAGAGTACATCTTGAGAATGCGACTGTTA

Basic information

species Glycine max
transcript GLYMA11G12610.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12610.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 10
-----------------gtagtaattttggttttgtcctttgccatttactttgtgtgcttctggatttttatcttttggtaatttttctctctatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAATATATTCGTTATATTTATAACAGAGTACATCTTGAGAATGCGACTGTTA
                  || ||  |||  ||    |   ||   |||| |   |     | ||  | |  ||  | |  | | |||| | ||  |   | ||||||| || || |||||  ||||||| |||||||| || || |||||||||||||| || ||||| ||||||||||||  |||||||||||| |||||| 
gtagcatttttctccatttaatatctttaattcaagctcatggtgtttatt---tacttctttgactatagatagtctactcaattttatttccttaattcagATACTCCATTTTCTGGGGATTGAAGGGCCAAAAACCTCAGATCCCAGCAAATATATACGGTATATCTATAACAGAGTAATTCTTGAGAATGCAACTGTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20497719|gb|BQ272649.1|BQ272649
EST:     ACCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAG                         ATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAA
genomic: ACCTTTGTGAGTTTATTGAAGATTGTGAATTCACTTATTTGTCCACACAGgtagtaattt ... tatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttgtgtgcttctggatttttatcttttggtaatttttctctctatcccttagATACTGCACTTCCTGGGAGTTGAAGGACCAAAAACTTCTGACCCCAGCAAATATATTCGTTATATTTATAACAGAGTACATCTTGAGAATGCGACTGTTA
                                taatttttctctctat  CT-rich tract
                 atttttatcttttggt  TA-rich tract