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...cctaacaatttaagaacttgtttcattatttgttttttacttttattttttatttgaaatatatcaatcttatacttcaacttttatactaacatttcagGGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTACCTTTCCATTTCTTTTTGCTGTAATGTTTGGTGATTGGGGGCATGGAATATGT
species | Glycine max |
transcript | GLYMA11G12120.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CGCACAAACAAATTTACTTCTTCTTTTCAAGGAATTATTGACTCATATGG GGTTAAGCTAAGTATCAGGAGEST: gi|193411199|gb|FK376822.1|FK376822
genomic: CGCACAAACAAATTTACTTCTTCTTTTCAAGGAATTATTGACTCATATGGgtgagcatca ... aacatttcagGGTT--GCTAAGTATCAGGAG
EST: CGCACAAACAAATTTACTTCTTCTTT-CAAGGAATTATTGACTCATATGG GGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTACCTTEST: gi|193424034|gb|FK391129.1|FK391129
genomic: CGCACAAACAAATTTACTTCTTCTTTTCAAGGAATTATTGACTCATATGGgtgagcatca ... aacatttcagGGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTACCTT
EST: CGCACAAACAAATTTACTTCTTC-TTTCAAGGAATTATTGACTCATATGG GGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTACCTTEST: gi|207713390|gb|GD695779.1|GD695779
genomic: CGCACAAACAAATTTACTTCTTCTTTTCAAGGAATTATTGACTCATATGGgtgagcatca ... aacatttcagGGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTACCTT
EST: CGCACAAACAAATTTACTTCTTCTTTTCAAGGAATTATTGACTCATATGG GGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTACCTTEST: gi|193540033|gb|FK499017.1|FK499017
genomic: CGCACAAACAAATTTACTTCTTCTTTTCAAGGAATTATTGACTCATATGGgtgagcatca ... aacatttcagGGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTACCTT
EST: TTATTGACTCATATGG GGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTACCTTEST: gi|193549644|gb|FK506401.1|FK506401
genomic: TTATTGACTCATATGGgtgagcatca ... aacatttcagGGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTACCTT
EST: CGCACAAACAAATTTACTTCTTCTTTTCAAGGAATTATTGACTCATATGG GGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTACCTT
genomic: CGCACAAACAAATTTACTTCTTCTTTTCAAGGAATTATTGACTCATATGGgtgagcatca ... aacatttcagGGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTACCTT
ttttttatttgaaatatatcaatcttatacttcaacttttatactaacatttcagGGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTACCTTTCCATTTCTTTTTGCTGTAATGTTTGGTGATTGGGGGCATGGAATATGT
tactaac putative branch site (score: 0)
tatttgaaatatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctaacaatttaagaacttgtttcattatttgttttttacttttattttttatttgaaatatatcaatcttatacttcaacttttatactaacatttcagGGTTGCTAAGTATCAGGAGGCAAATCCTACTGTGTATACTGTAGTTACCTTTCCATTTCTTTTTGCTGTAATGTTTGGTGATTGGGGGCATGGAATATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
cctaaca