1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagcttcaactcccccccccccccgctgacatagatgtgtttcatttttacttctctctcttttaaattacatcatatttcatgctatttcagGTTCTTGCTTTCGAAGCAGGAAGAAAGCGCAAAATTAGAGTCAATACTATATCTGCTG
species | Glycine max |
transcript | GLYMA11G10770.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGTGGTGGTATGAAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACGA GTTCTTGCTTTCGAAGCAGGAAGAAAGCGCEST: gi|15287567|gb|BI471458.1|BI471458
genomic: TGGTGGTGGTATGA-GTTCTGCCAAAGCTGCACTGGAGAGTGATACACGAgtaagcttca ... gctatttcagGTTCTTGCTTTCGAAGCAGGAAGAAAGCGC
EST: ATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACGA GTTCTTGCTTTCGAAGCAGGAAGAAAGCGCAAAATTAGAGTCAATACTATAEST: gi|12773652|gb|BG238579.1|BG238579
genomic: ATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACGAgtaagcttca ... gctatttcagGTTCTTGCTTTCGAAGCAGGAAGAAAGCGCAAAATTAGAGTCAATACTATA
EST: TGGTGGTGGTATGAGTTCTGCCANNAGCTGCACTGGAGAGTGATACACGA GTTCTTGCTTTCGAAGCAGGAAGAAAGCGCEST: gi|209721948|gb|BW680083.1|BW680083
genomic: TGGTGGTGGTATGAGTTCTGCCAA-AGCTGCACTGGAGAGTGATACACGAgtaagcttca ... gctatttcagGTTCTTGCTTTCGAAGCAGGAAGAAAGCGC
EST: ATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACGA GTTCTTGCTTTCGAAGCAGGAAGAAAGCGCAAAATTAGAGTCAATACTATAEST: gi|7030180|gb|AW459963.1|AW459963
genomic: ATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACGAgtaagcttca ... gctatttcagGTTCTTGCTTTCGAAGCAGGAAGAAAGCGCAAAATTAGAGTCAATACTATA
EST: ATGGTGGTGGTATGAGTTCTGCCGAAGCTGCACTGGAGAGTGATACACGA GTTCTTGCTATCGAAGCATGAAGAAAGCTCAGAATTAGAGTAAATACTATA
genomic: ATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACGAgtaagcttca ... gctatttcagGTTCTTGCTTTCGAAGCAGGAAGAAAGCGCAAAATTAGAGTCAATACTATA
gtttcatttttacttctctctcttttaaattacatcatatttcatgctatttcagGTTCTTGCTTTCGAAGCAGGAAGAAAGCGCAAAATTAGAGTCAATACTATATCTGCTG
ctatttc CT-rich tract
ttttaaattacatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttcaactcccccccccccccgctgacatagatgtgtttcatttttacttctctctcttttaaattacatcatatttcatgctatttcagGTTCTTGCTTTCGAAGCAGGAAGAAAGCGCAAAATTAGAGTCAATACTATATCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA