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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcaataagctataatcttaaatgtataacttacactactgaatgtctgaagtggaattgtggatgatgatgtataatatgtatgcttttctaaaaccagGTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG

Basic information

species Glycine max
transcript GLYMA11G09370.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23730833|gb|BU763521.1|BU763521
EST:     AAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG                         GTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCT
genomic: AAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGgtatgcattc ... ctaaaaccagGTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCT
EST: gi|9820048|gb|BE555561.1|BE555561
EST:     AAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG                         GTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCT
genomic: AAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGgtatgcattc ... ctaaaaccagGTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCT
EST: gi|208154105|gb|GD954402.1|GD954402
EST:     AAGATTG-TTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG                         GTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCT
genomic: AAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGgtatgcattc ... ctaaaaccagGTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCT
EST: gi|4288246|gb|AI441305.1|AI441305
EST:     AAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG                         GTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCT
genomic: AAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGgtatgcattc ... ctaaaaccagGTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgaagtggaattgtggatgatgatgtataatatgtatgcttttctaaaaccagGTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAG
                                           ttctaaa  putative branch site (score: 2)
                                      tgcttttct  CT-rich tract
                        atgtataatatgtat  TA-rich tract