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gtaagttctctatcttgttcaaataaatgagtcatatatgtaattccttatttcaatgaaaactcttctgtgcagAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG
species | Glycine max |
transcript | GLYMA11G09370.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAAGTGAATGTACAAAAAACT AAAGATTG-TTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGEST: gi|208190742|gb|GD991390.1|GD991390
genomic: AAAGTGAATGTACAAAAAACTgtaagttctc ... ttctgtgcagAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG
EST: TTGATATTGGACCTCCTGCTGATTGGGTAAAAGTGAATGTACAAAAAACT AAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTGCTGAGGGAAGAGEST: gi|22523112|gb|BU081923.1|BU081923
genomic: TTGATATTGGGCCTCCTGCTGATTGGGTAAAAGTGAATGTACAAAAAACTgtaagttctc ... ttctgtgcagAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG
EST: TTGATATTGGGCCTCCTGCTGATTGGGTAAAAGTGAATGTACAAAAAACT AAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGEST: gi|14259145|gb|BG882053.1|BG882053
genomic: TTGATATTGGGCCTCCTGCTGATTGGGTAAAAGTGAATGTACAAAAAACTgtaagttctc ... ttctgtgcagAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG
EST: TTGATATTGGGCCTCCTGCTGATTGGGTAAAAGTGAATGTACAAAAAACT AAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGEST: gi|209718163|gb|BW657809.1|BW657809
genomic: TTGATATTGGGCCTCCTGCTGATTGGGTAAAAGTGAATGTACAAAAAACTgtaagttctc ... ttctgtgcagAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG
EST: TTGATATTGGGCCTCCTGCTGATTGGGTAAAAGTGAATGTACAAAAAACT AAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGEST: gi|192294436|gb|FG987365.1|FG987365
genomic: TTGATATTGGGCCTCCTGCTGATTGGGTAAAAGTGAATGTACAAAAAACTgtaagttctc ... ttctgtgcagAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG
EST: TTGATATTGGGCCTCCTGCTGATTGGGTAAAAGTGAATGTACAAAAAACT AAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG
genomic: TTGATATTGGGCCTCCTGCTGATTGGGTAAAAGTGAATGTACAAAAAACTgtaagttctc ... ttctgtgcagAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG
aaataaatgagtcatatatgtaattccttatttcaatgaaaactcttctgtgcagAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG
ctcttctgt CT-rich tract
ttatttcaatgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctctatcttgttcaaataaatgagtcatatatgtaattccttatttcaatgaaaactcttctgtgcagAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA