Sequence
atgc intronic sequence ATGC exonic sequencegtaagcattctgttctctgtatatatgaaattctcaaattggatctcgaattgtaagccatttgattggttgcagTTAATTTTGGCTGTTGGAACAAAACTTCAAGCTATATTGGCAAAGATGGCTCTTGAAATCACCGAAAGACATGCAGTTGTCCAAGGAATGCCTCTTGTCC
Basic information
species | Glycine max |
transcript | GLYMA11G09270.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G09270.1 (Glycine max), 3'ss of exon 10
lower sequence: AT2G17480.1 (Arabidopsis thaliana), 3'ss of exon 10
----------------gtaag-cattctgttctctgtatatatgaaattctcaaat-----tggatctcgaattgtaagcc--atttgattggttgca-gTTAATTTTGGCTGTTGGAACAAAACTTCAAGCTATATTGGCAAAGATGGCTCTTGAAATCACCGAAAGACATGCAGTTGTCCAAGGAATGCCTCTTGTCC
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gtaagttatctttcacgtaattcgttgaaatcttccaaataataatatctttaaggactcacagtttttgacaaactagttttgtttttttgttttcaagATCATTTTAGCTGTAGGGACAAAGCTTCAAGCGATTATGACAAGGATGGCTCTTGGTATCACAGATAGACATGCGGTAGTTCAAGGAATGCCGCTTGTAC
upper sequence: GLYMA11G09270.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 10
gtaagcattctgttctctg-tatatatgaaattctcaaattggatctcgaattgtaagccatttgattggttgcagTTAATTTTGGCTGTTGGAACAAAACTTCAAGCTATATTGGCAAAGATGGCTCTTGAAATCACCGAAAGACATGCAGTTGTCCAAGGAATGCCTCTTGTCC
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gtaagaagttttctctggaacgtcttttccaggttaatataaaaaatcaaatcctga-ctgtttaaccggttgcagATAGTCTTCGCTGTGGGAACAAAGCTTCAAGCTGTTCTTACAAAGATGGCTCTTGAAATCACAGAAAGACATGCAGTGGTCCAAGGGATTCCGCTTGTGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208219865|gb|GE018989.1|GE018989EST: GATGGCGTACCACAATTTGGGCAGCCTTAATTCCTGTTGTC TTAATTTTGGCTGTTGGAACAAAACTTCAAGCTATATTGGCAAAGATGGCT
genomic: GATGGCGTACCACAATTTGGGCAGCCTTAATTCCTGTTGTCgtaagcattc ... ttggttgcagTTAATTTTGGCTGTTGGAACAAAACTTCAAGCTATATTGGCAAAGATGGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatatgaaattctcaaattggatctcgaattgtaagccatttgattggttgcagTTAATTTTGGCTGTTGGAACAAAACTTCAAGCTATATTGGCAAAGATGGCTCTTGAAATCACCGAAAGACATGCAGTTGTCCAAGGAATGCCTCTTGTCC
atttgat putative branch site (score: 5)
aattgtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcattctgttctctgtatatatgaaattctcaaattggatctcgaattgtaagccatttgattggttgcagTTAATTTTGGCTGTTGGAACAAAACTTCAAGCTATATTGGCAAAGATGGCTCTTGAAATCACCGAAAGACATGCAGTTGTCCAAGGAATGCCTCTTGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA