1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagcatcaagcaccagtgttcaattaaaatgactcatgttgcttcatactgactagtgactaccctattttgtgaattagGGGGAGATGCTCGGAGAACTAGTAAAAAAATTTTTGTCGGCCGTCTTCCCCCAGAAGCAACTTCTGATGATCTTCGCCAATATTTTGGAAGATTTGGTCG
species | Glycine max |
transcript | GLYMA11G05940.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAA GGGGAGATGCTCGGAGAACTAGTNNNNNNNTTTTTGTCGGCCGTCTTCCCCEST: gi|192298605|gb|FG989251.1|FG989251
genomic: AGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAgtaagcatca ... tgtgaattagGGGGAGATGCTCGGAGAACTAGTAAAAAAATTTTTGTCGGCCGTCTTCCCC
EST: AGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAA GGGGAGATGCTCGGAGAACTAGTNNNNNNNTTTTTGTCGGCCGTCTTCCCCEST: gi|208090237|gb|GD890060.1|GD890060
genomic: AGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAgtaagcatca ... tgtgaattagGGGGAGATGCTCGGAGAACTAGTAAAAAAATTTTTGTCGGCCGTCTTCCCC
EST: AGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAA GGGGAGATGCTCGGAGAACTAG
genomic: AGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAgtaagcatca ... tgtgaattagGGGGAGATGCTCGGAGAACTAG
aaaatgactcatgttgcttcatactgactagtgactaccctattttgtgaattagGGGGAGATGCTCGGAGAACTAGTAAAAAAATTTTTGTCGGCCGTCTTCCCCCAGAAGCAACTTCTGATGATCTTCGCCAATATTTTGGAAGATTTGGTCG
tactgac putative branch site (score: 1)
ccctatttt putative PPT
tattttgtgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcatcaagcaccagtgttcaattaaaatgactcatgttgcttcatactgactagtgactaccctattttgtgaattagGGGGAGATGCTCGGAGAACTAGTAAAAAAATTTTTGTCGGCCGTCTTCCCCCAGAAGCAACTTCTGATGATCTTCGCCAATATTTTGGAAGATTTGGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA