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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcctaataggataaactaagaagccatgcaaaatatatgcattccagatgtgttgttatgttgcttcaatattttcaaaggttatcagtttctatttgatttggaagctcaaacttttgttattgccttgccatttcagGTTGGATCCGATGGTATGCTTGATGATTGGGAGGAGAATCTGGCTGTAATAACTGCAAACAGAACCAAAAGTGATGAACTTGTAATTATTCACCTAGGTG

Basic information

species Glycine max
transcript GLYMA11G03590.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03590.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os06g01650.2 (Oryza sativa), 3'ss of exon 5
gtaatcctaataggataaactaagaagccatgcaaaatatatgcattccagatgtgttgttatgttgcttcaatattttcaaaggttatcagtttctatttgatttggaagctcaaacttttgttattgccttgccatttcagGTTGGA---TCCGATGGTATGCTTGATGATTGGGAGGAGAATCTGGCTGTAATAACTGCAAACAGAACCAAAAGTGATGAACTTGTAATTATTCACCTAGGTG
                                         ||  ||||   |   |  || |  | | |     || |||    ||||| || | |   | ||| ||    |  ||| |   |||     ||        ||| ||     ||  |  | ||||| ||||||||| | |||||| ||||| | |||||||||||||| || ||| ||||||| ||||||||||  ||||| |   
---------------------------------------cttgacttcccattccatgattttcatacattttagttctcatcttttatc-gtgtgtggatcattaggg---ttgaacctaacttagcatttttgttggatagGCTGTGAATTCTAAGAGCATGCTGGATGATTGGCAAGAGAATTTGGCTATTATAACTGCAAACAGGACGAAAGGTGATGATCTTGTAATTACGCACCTTG---

upper sequence: GLYMA11G03590.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G442742_T01 (Zea mays), 3'ss of exon 1
gtaatcctaataggataaactaagaagccatgcaaaatatatgcattccagatgtgttgttatgttgcttcaatattttcaaaggttatcagtttctatttgatttggaagctcaaacttttgttattgccttgccatttcagGTTGGATCCGATGGTATGCTTGATGATTGGGAGGAGAATCTGGCTGTAATAACTGCAAACAGAACCAAAAGTGATGAACTTGTAATTATTCACCTAGGTG---
                                  ||  |||  | | |   |    |||   |  ||   ||| |   |  ||| | || |     |  |||| ||      |      |||||| ||  | ||     ||||  |||      |  |||| | |||||||||||||||||| ||||| | || |||||||||||||| ||| |||| |  || ||||| |  || || ||||   
----------------------------------aacaataaacttcctccaataattgg-gtcctgaaacaagaagcttgaag-tcatgatgacatgattgacttt----ttttgcaatttgtttttttcctgag---tcagCCTGGTC---GTAATATGTTGGATGATTGGGAGGAGAATTTGGCTATTATTACTGCAAACAGAACAAAAGGTGACGTTCTAGTAATCACCCATCTTGGTGATT

upper sequence: GLYMA11G03590.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G163277_T01 (Zea mays), 3'ss of exon 5
---------------gtaatcct-aataggataaactaagaagccatgcaaaatatatgcattccagatgtgttgtt--atgttgcttcaatattttcaaaggttatc--------agtttctatttgatttggaagctcaaacttttgtta--ttgccttgcc-atttcagGTTGGATCCGATGGTATGCTTGATGATTGGGAGGAGAATCTGGCTGTAATAACTGCAAACAGAACCAAAAGTGATGAACTTGTAATTATTCACCTAGGTG
                |  |  | ||| |  |   || | |     ||    ||  | |  | |   |||| |||||   ||  |  |||  |||||      | |          | ||||    |  | |     ||     ||||| ||  |||  || ||    ||||  |||  |  |||||||| | |||||||||||||||||| | ||| | || |||||||||||||| ||| |||| || || ||||| |  || || ||||
gtacttgcaaagttaatggtttttaattgtttttgctgaca--ttttgtttgattaacgattgcataatgtcttgtttactgcagtgtcatgatttttgggtatcacttaccaataattttcctgcttttctatttactttcttttttgataatttgtttttcctgagtcagCCTGGTCCTAATGGTATGTTGGATGATTGGGAGGAGAATTTAGCTATTATTACTGCAAACAGAACGAAAGGTGACGATCTAGTAATCACCCATCTTGGTG

upper sequence: GLYMA11G03590.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G429241_T01 (Zea mays), 3'ss of exon 5
gtaatcctaataggataaactaagaagccatgcaaaatatatgcattccagatgtgttgttatgttgcttcaata-ttttcaaaggttatcagtttctatttgatttggaagctcaaacttttgttattgccttgccatttcagGTTGGATCCGATGGTATGCTTGATGATTGGGAGGAGAATCTGGCTGTAATAACTGCAAACAGAACCAAAAGTGATGAACTTGTAATTATTCACCTAGGTG---
                                       |     |||  ||  | | | |||      |||||| |||||  || || |    ||   | ||| ||       |||   |||||| ||   || |    ||||  |||  |  ||   ||| | |||||||||||||||||| ||||| | || ||||||||||||||  || |||| |  || ||||| |  || || ||||   
---------------------------------------tgcagcttcatgacttttgggtatcacttatcaataattttcctagttttttttgtttactctgacttttttttgcaa---tttgttttt--tttcctgagtcagCCTGGTCCTAAT---ATGTTGGATGATTGGGAGGAGAATTTGGCTATTATTACTGCAAACAGAACAGAAGGTGACGTTCTAGTAATCACCCATCTTGGTGATT

upper sequence: GLYMA11G03590.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv00s0229g00030.t01 (Vitis vinifera), 3'ss of exon 5
gtaatcctaataggataaactaagaagccatgcaaaatatatgcattccagatgtgttgttatgttgcttcaatattttcaaaggttatcagtttctatttgatttggaagctcaaacttttgttattgccttgccatttcagGTTGGATCCGATGGTATGCTTGATGATTGGGAGGAGAATCTGGCTGTAATAACTGCAAACAGAACCAAAAGTGATGAACTTGTAATTATTCACCTAGGTG
                              | | |  |  |    || || | ||    || | |||  ||  |   |  | | | | ||  | ||| | |   |      ||||| ||||| ||||    ||     | ||| ||||  |  || ||||||| || |||||||| |||||| ||||||| |||||||| || ||||| |||  ||||||||||||| ||||||| || || |
------------------------------ttcgaccttaacattttgcaaaagt----ttctattgtatctttgcctcaacaagctctctctctctgtgtctctct----ctcaatcttttcttatgaaatt-----tccagTTTGGGGCTAATAGTATGCTAGACGATTGGGAAGAGAATTTGGCTGTGATAACTGCCAATAGAACAAAAGATGATGAACTTGTACTTATTCATCTTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtttctatttgatttggaagctcaaacttttgttattgccttgccatttcagGTTGGATCCGATGGTATGCTTGATGATTGGGAGGAGAATCTGGCTGTAATAACTGCAAACAGAACCAAAAGTGATGAACTTGTAATTATTCACCTAGGTG
         atttgat  putative branch site (score: 5)
                                         ccttgcc  putative PPT
                          aaacttttgttatt  TA-rich tract