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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttctacaattttcccttctcactctgaatttttgtgttaactctcttatacataaacacaaaatcttctgtatttttaagGTTCCTGGCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGAGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATAT

Basic information

species Glycine max
transcript GLYMA11G03230.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03230.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 10
gtaa--cttctacaattttcccttctcactctgaatttt-tgtgttaactctcttatacataaacacaaaatcttctgtatttttaagGTTCCTGGCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGAGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATAT
||||  ||| | ||| |||   || |   | || ||||  | |  |   ||  |||    |        |    |   |  |||| |||||||  | ||| | ||||||||| |||||| |||||| || ||||||||||||||||||||| | ||||| || || |||||||| ||||| ||| ||
gtaagccttttccaaattttatttatgcttttggatttgatattgtttttcctttagctgtgtgtgttgaggaattattcctttttagGTTCCAAGTAAAACAGGTGGTCCACCAGAGAAAAAAGAAGTCCTTTTGGAGGATCATGATCCTGTCTGGCTTGAGCTCCGCCATGCACATATAGCAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21602829|gb|BQ613160.1|BQ613160
EST:     CCATGTGTCATGATTTGCTGAATATGGAGGGAAATAAATATGTTCATGAA                         GTTCCTGGCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGTAG
genomic: CCATGTGTCATGATTTGCTGAATATGGAGGGAAATAAATATGTTCATGAAgtaacttcta ... tatttttaagGTTCCTGGCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGAG
EST: gi|254335298|gb|GR846795.1|GR846795
EST:     CCATGTGTCATGATTTGCTGAATATGGAGGAAAATAAATATGTTCATGAA                         GTTCCTGGCCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGA
genomic: CCATGTGTCATGATTTGCTGAATATGGAGGGAAATAAATATGTTCATGAAgtaacttcta ... tatttttaagGTTCCTGG-CAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGA
EST: gi|20497874|gb|BQ272804.1|BQ272804
EST:     CCATGTGTCATGATTTGCTGAATATGGAGGGAAATAAATATGTTCATGAA                         GTTCCTGGCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGAG
genomic: CCATGTGTCATGATTTGCTGAATATGGAGGGAAATAAATATGTTCATGAAgtaacttcta ... tatttttaagGTTCCTGGCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatttttgtgttaactctcttatacataaacacaaaatcttctgtatttttaagGTTCCTGGCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGAGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATAT
         tgttaac  putative branch site (score: 2)
                                      tcttctgtattttt  putative PPT
                                        ttctgtatttttaa  TA-rich tract