1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tatatctagtttgaattcagccgatttgtataaagtgaataatttcatgattcacttactgctgttttctatctagtgtaactttttccatggtgtatagGCATCTGTGCAGATGTTGCAGTTTCAAAGTATGAACTTTGGTCATCCTTAGCCCCTCTTCCGTTCGAGGTCGTTGTTTCTGCTGGACAAAAGGCTAAGGA
species | Glycine max |
transcript | GLYMA10G44630.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TAAAGAGGTG-TGGCTTGCTCGTTA-TGGGGNTTAGCTGCAAAATATG GCATCTGTGCAGATGTTGCAGTTTCAAAGTATGAACTTTGGTCATCCTTAGEST: gi|207785367|gb|GD759118.1|GD759118
genomic: TAAAGAGGTGTTGGCTTGCTCGTTATTGGGGTTTAGCTGCAAAATATGgtaagccgtt ... tggtgtatagGCATCTGTGCAGATGTTGCAGTTTCAAAGTATGAACTTTGGTCATCCTTAG
EST: TCTAAAGAGGTGTTGGCTTGCTCGTTATTGGGGTTTAGCTGCAAAATATG GCATCTGTGCAGATGTTGEST: gi|207713218|gb|GD694767.1|GD694767
genomic: TCTAAAGAGGTGTTGGCTTGCTCGTTATTGGGGTTTAGCTGCAAAATATGgtaagccgtt ... tggtgtatagGCATCTGTGCAGATGTTG
EST: TCTAAAGAGGTGTTGGCTTGCTCGTTATTGGGGTTTAGCTGCAAAATATG GCATCTGTGCAGATGTTGCAGTTTCAAAGTATGAACTTTGGTCATCCTTAGEST: gi|58015739|gb|CX702481.1|CX702481
genomic: TCTAAAGAGGTGTTGGCTTGCTCGTTATTGGGGTTTAGCTGCAAAATATGgtaagccgtt ... tggtgtatagGCATCTGTGCAGATGTTGCAGTTTCAAAGTATGAACTTTGGTCATCCTTAG
EST: AGCTGCAAAATATG GCATCTGTGCAGATG-TGNCAGTTTCAAAGTATGAACTTTGGTCATCCTTAEST: gi|207832377|gb|GD804433.1|GD804433
genomic: AGCTGCAAAATATGgtaagccgtt ... tggtgtatagGCATCTGTGCAGATGTTG-CAGTTTCAAAGTATGAACTTTGGTCATCCTTA
EST: TCTAAAGAGGTGTTGGCTTGCTCGTTATTGGGGTTTAGCTGCAAAATNTG GCATCTGTGCAGATGTTG
genomic: TCTAAAGAGGTGTTGGCTTGCTCGTTATTGGGGTTTAGCTGCAAAATATGgtaagccgtt ... tggtgtatagGCATCTGTGCAGATGTTG
catgattcacttactgctgttttctatctagtgtaactttttccatggtgtatagGCATCTGTGCAGATGTTGCAGTTTCAAAGTATGAACTTTGGTCATCCTTAGCCCCTCTTCCGTTCGAGGTCGTTGTTTCTGCTGGACAAAAGGCTAAGGA
ctttttccat CT-rich tract
taacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatctagtttgaattcagccgatttgtataaagtgaataatttcatgattcacttactgctgttttctatctagtgtaactttttccatggtgtatagGCATCTGTGCAGATGTTGCAGTTTCAAAGTATGAACTTTGGTCATCCTTAGCCCCTCTTCCGTTCGAGGTCGTTGTTTCTGCTGGACAAAAGGCTAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - -tgaattc
- - - - - - - - - - - - - - - - - - - - - -ttcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - cacttac