1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaatgaaatatacaagttcatcagctatcttgcatgatggtttcttaacactgaatgattatattttgaacttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG
species | Glycine max |
transcript | GLYMA10G42940.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGAEST: gi|16283344|gb|BI945501.1|BI945501
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: CTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGAEST: gi|16283207|gb|BI945427.1|BI945427
genomic: CTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGAEST: gi|16279679|gb|BI943560.1|BI943560
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGAEST: gi|16278507|gb|BI942940.1|BI942940
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
EST: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATG ATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAAGGGCAGA
genomic: GCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGgtaatgaaat ... ttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGA
atcttgcatgatggtttcttaacactgaatgattatattttgaacttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG
tcttaac putative branch site (score: 2)
cttctgt putative PPT
aatgattatattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgaaatatacaagttcatcagctatcttgcatgatggtttcttaacactgaatgattatattttgaacttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG