1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aacagtaggccattaaatcattattgctaattttcactactaccaaaaaccttcaaaagtttatatcaattgtattctgagtatgtgttgtctttcttagGCTGACCTATTGAGGCAACAAACTCTGCAACAGATGCGTCGAATTTTGACCACTTTCCAAGCTGCTCGTGCGCTACTTGTGATAAATGATTACGTTTCAC
species | Glycine max |
transcript | GLYMA10G42280.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGCAATTGCACTGGGCAAGCTGGCCACACTAGAGAATTTCCTTCATCAG GCTGACCTATTGAGGCAACAAACTCTGCAACAGATGCGTCGAATTTTGACCEST: gi|51335709|gb|CO979575.1|CO979575
genomic: TGGCAATTGCACTGGGCAAGCTGGCCACACTAGAGAATTTCCTTCATCAGgtaacaacta ... tctttcttagGCTGACCTATTGAGGCAACAAACTCTGCAACAGATGCGTCGAATTTTGACC
EST: TGGCAATTGCACTGGGCAAGCTGGCCACACTAGAGAATTTCCTTCATCAG GCTGACCTATTGAGGCAACAAACTCTGCAACAGATGCGTCGAATTTTGACC
genomic: TGGCAATTGCACTGGGCAAGCTGGCCACACTAGAGAATTTCCTTCATCAGgtaacaacta ... tctttcttagGCTGACCTATTGAGGCAACAAACTCTGCAACAGATGCGTCGAATTTTGACC
aaaaccttcaaaagtttatatcaattgtattctgagtatgtgttgtctttcttagGCTGACCTATTGAGGCAACAAACTCTGCAACAGATGCGTCGAATTTTGACCACTTTCCAAGCTGCTCGTGCGCTACTTGTGATAAATGATTACGTTTCAC
ttgtctttctt CT-rich tract
aaaagtttatatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacagtaggccattaaatcattattgctaattttcactactaccaaaaaccttcaaaagtttatatcaattgtattctgagtatgtgttgtctttcttagGCTGACCTATTGAGGCAACAAACTCTGCAACAGATGCGTCGAATTTTGACCACTTTCCAAGCTGCTCGTGCGCTACTTGTGATAAATGATTACGTTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - gtaggcc
- - - - - - - - - - - - - - - - - - - -ctaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgtg