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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatctatttacttaatttattattaacgaaatgatacaccaacatatgtcaacattaattcgtctgtgtgggtttttgtgcatgtcttgaaatatatgtttgctatatgctattaccttttctattctcccaagtgtaacttcagaagtatctatatggaatgtgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTTCGTGCTATCTCTCTGCTTGCTCCTGTGATGGGCCCTGAAATCACTTGTT

Basic information

species Glycine max
transcript GLYMA10G42250.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42250.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G102858_T01 (Zea mays), 3'ss of exon 10
gttcatctatttacttaatttattattaacgaaatgatacaccaacatatgtcaacattaattcgtctgtgtgggtttttgtgcatgtcttgaaatatatgtttgctatatgctattaccttttctattctcccaagtgtaacttcagaagtatctatatggaatgtgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTTCGTGCTATCTCTCTGCTTGCTCCTGTGATGGGCCCTGAAATCACTTGTT
                                                                              |   |   || ||| |||| |  ||    ||     ||||  | |   |        | || || |    |  |    | ||    | | |     |||||||||||| ||  ||||||||||| ||| ||||||||||||| | | | |  ||||| ||| |||| |||||||| ||||| ||||| ||||| ||  
----------------------------------------------------------------------------ggtaaagagggtattggaataaaatttactcatggttaattaattatatcaacagattgattgaaaatctttatattgtcaaatctcttttatattctagGTTTTGGAGAAGATAAACAACCCACATTATCTGTATCGGATGACCACTTTGCAAGCTATTTCTTTGCTAGCTCCTGTCATGGGTCCTGATATCACATGCC

upper sequence: GLYMA10G42250.1 (Glycine max), 3'ss of exon 10
lower sequence: AT1G13320.1 (Arabidopsis thaliana), 3'ss of exon 10
gttcatctatttacttaatttattattaacgaaatgatacaccaacatatgtcaacattaattcgtctgtgtgggtttttgtgcatgtcttgaaatatatgtttgctatatgctattaccttttctattctcccaagtgtaacttcagaagtatctatatggaatgtgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTTCGTGCTATCTCTCTGCTTGCTCCTGTGATGGGCCCTGAAATCACTTGTT
                                                                          |||| |||  |  |||| ||  ||||  |   | |    | | |  |     ||| |  | | ||    |   | ||||| | ||         | |  |||||| | |||||||  ||||||||||||||| | ||||||||||| |||||||||||  | || || || ||||| || |||||  | || ||||| ||||
--------------------------------------------------------------------------gtttgtgtagaaatctt-aagcatatagtatgttttcaat-tcaaatcgagcattttagctattg--gttattggagtatatttac--------ttgttcagGTTCTAGAGATGATTAACAACCCACACTATCTATATCGGATGACGATTCTTCGTGCAGTATCGCTTCTCGCTCCAGTAATGGGATCCGAGATCACATGTT

upper sequence: GLYMA10G42250.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 3'ss of exon 9
gttcatctatttacttaatttattattaacgaaatgatacaccaacatatgtcaacattaattcgtctgtgtgggtttttgtgcatgtcttgaaatatatgtttgctatatgctattaccttttctattctcccaagtgtaacttcagaagtatctatatggaatgtgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTTCGTGCTATCTCTCTGCTTGCTCCTGTGATGGGCCCTGAAATCACTTGTT
                                                                               | |     | |||  || | ||||||  |||||  |  | ||||| |  |||        | | ||   ||     |  | |       |||  ||||| ||||||||||  |||||  ||||||||||||||||||||||| |||| || || || || || ||||| ||||  |||||| | ||||| |||| ||
------------------------------------------------------------------------aacgccatatatggattttgccat-tctgtttga-atatgg-acgatcttttatcatctttttctcatcattttctaaagcaatgcaagttccacctggg-cagGTCTTGGAGATGATTAACAATTCACACTATTTGTATCGGATGACTGTTCTACGGGCAATTTCCCTACTTGCCCCTGCCATGGGCGCAGAAATTACTTATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403929|gb|EV273739.1|EV273739
EST:     TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
genomic: TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
EST: gi|151407658|gb|EV277473.1|EV277473
EST:     TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGAAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
genomic: TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
EST: gi|17153685|gb|BM143618.1|BM143618
EST:     TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
genomic: TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
EST: gi|14012021|gb|BG726943.1|BG726943
EST:     TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
genomic: TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
EST: gi|254336135|gb|GR841460.1|GR841460
EST:     TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
genomic: TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
EST: gi|254343718|gb|GR857474.1|GR857474
EST:     TTGCTGAAGAATTTGGT-CTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
genomic: TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
EST: gi|254331030|gb|GR842295.1|GR842295
EST:     TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTC
genomic: TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTC
EST: gi|19270079|gb|BM886335.1|BM886335
EST:     TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
genomic: TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
EST: gi|254331031|gb|GR842296.1|GR842296
EST:     TGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
genomic: TGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
EST: gi|16105352|gb|BI893092.1|BI893092
EST:     TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
genomic: TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
EST: gi|7926502|gb|AW832528.1|AW832528
EST:     TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAT                         GTTTTGGAGATGAACAACAACCCACACTATCTGTATCGGATGACTATTCTG
genomic: TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
EST: gi|254343474|gb|GR857230.1|GR857230
EST:     TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
genomic: TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
EST: gi|254343473|gb|GR857229.1|GR857229
EST:     TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
genomic: TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
EST: gi|17400839|gb|BM177621.1|BM177621
EST:     TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAG                         GTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
genomic: TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
EST: gi|26059184|gb|CA802098.1|CA802098
EST:     TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATACTTCCTCAG                         GTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT
genomic: TTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctat ... tgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctattctcccaagtgtaacttcagaagtatctatatggaatgtgtggaacagGTTTTGGAGATGAACAACAACCCACACTATTTGTATCGGATGACTATTCTTCGTGCTATCTCTCTGCTTGCTCCTGTGATGGGCCCTGAAATCACTTGTT
               gtgtaac  putative branch site (score: 3)
                              tatctatat  TA-rich tract