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gtaagggatcatcttttgctgttctttgctaatattttgtgcatttgtgtgtggtgagggggtggggaggtgggagggggggggggggggaggtcttgttatcctttttacctatcagcctctgtccactggcttattttttgctgttaatatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGT
species | Glycine max |
transcript | GLYMA10G42180.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCTGACTTCCTTCGCCTGATAAGA-AAACAAC-ACAGAAGGTGCTGAAGG GAACATATTGGGGCAGATGGCTTAC-GCGATGCCACAAGCAGTAACCGTCAEST: gi|15285661|gb|BI469552.1|BI469552
genomic: GCTGACTTCCTTCGCCTGATAA-ATGAAC--CTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTT-CTGCGATGCCACAAGCAGTAACCGTCA
EST: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGG GAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCACEST: gi|10709284|gb|BF009008.1|BF009008
genomic: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
EST: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGG GAACATATTNGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCACEST: gi|12690109|gb|BG156445.1|BG156445
genomic: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
EST: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGG GAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCACEST: gi|213596136|gb|DB977498.1|DB977498
genomic: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
EST: AGAAGGTGCTGAAGG GAACATATTGGGGCAGATGGAGTCTGCGATG-CACGAAGCAGTAACCGTCAEST: gi|151401292|gb|EV271106.1|EV271106
genomic: AGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCAC-AAGCAGTAACCGTCA
EST: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGG GAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCACEST: gi|24205755|gb|BU965008.1|BU965008
genomic: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
EST: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGG GAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCACEST: gi|15663984|gb|BI701355.1|BI701355
genomic: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
EST: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGG GAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCACEST: gi|10709685|gb|BF009409.1|BF009409
genomic: CAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
EST: AGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGG GAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
genomic: AGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGgtaagggatc ... tatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCAC
ttttacctatcagcctctgtccactggcttattttttgctgttaatatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGT
tgttaat putative branch site (score: 3)
ttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggatcatcttttgctgttctttgctaatattttgtgcatttgtgtgtggtgagggggtggggaggtgggagggggggggggggggaggtcttgttatcctttttacctatcagcctctgtccactggcttattttttgctgttaatatgcttcagGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG