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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttattaatgcacttgatattcttttacttgcatggcatttgaattgcttggtttcatttatttcctactggtattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTATTTTAATTGGCTTAGTTGTGGCTGCTGCAGGGGCATACCTTGTGTACAA

Basic information

species Glycine max
transcript GLYMA10G40340.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208310294|gb|GE107656.1|GE107656
EST:     GCAGTGGGGATTTCTTTTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: GCAGTGGGGA--TC-TTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|6746932|gb|AW317388.1|AW317388
EST:     CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|208087431|gb|GD888515.1|GD888515
EST:     TAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: TAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|207771835|gb|GD745606.1|GD745606
EST:     CTTTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: CTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|207787491|gb|GD762810.1|GD762810
EST:     CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTAGGCTGCTTTTTGGGTTA
genomic: CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|208107586|gb|GD906535.1|GD906535
EST:     CACTTGCAGTGGGGATC-TTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|208120192|gb|GD919301.1|GD919301
EST:     CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|193352941|gb|FK315167.1|FK315167
EST:     CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
EST: gi|10845475|gb|BF068594.1|BF068594
EST:     CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAA                         GTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA
genomic: CACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttatt ... tattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcatggcatttgaattgcttggtttcatttatttcctactggtattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTATTTTAATTGGCTTAGTTGTGGCTGCTGCAGGGGCATACCTTGTGTACAA
                         tttcatttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttattaatgcacttgatattcttttacttgcatggcatttgaattgcttggtttcatttatttcctactggtattctgcagGTAAAACTGCCAGTCAGGAGGGAAGATCAGCTTGGGCTGCTTTTTGGGTTATTTTAATTGGCTTAGTTGTGGCTGCTGCAGGGGCATACCTTGTGTACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG