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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaatcttaaactgagatggactattaatttaatctcatgtatctaaaattagcctttccgctgactgattatttaattcatacattacatatattgtatggaaaaaatacgtaatataaatttctgttatgtattgaattatgatagGATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACGTGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTT

Basic information

species Glycine max
transcript GLYMA10G38920.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38920.2 (Glycine max), 3'ss of exon 10
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 3'ss of exon 10
------------gtataaatcttaaactgagatggactattaatttaatctcatgtatctaaaattagcctttccgctgactgattatttaattcatacattacatatattgtatggaaa----aaatacgtaatataa--atttctgt---------tatgtattgaattatgatagGATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACGTGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTT
             |  | ||||||     |     |   ||  || |  |  ||   | | |  || ||  ||  | |   || |   |  |    || |  |   || |    |  |||    |   |  ||  | ||  | || |||         | | | |||   | | | ||||||| ||||| || || || ||||| || || ||||| ||| ||||||||||||  |||| ||| ||||||||||| || |||||  | ||||||||||
gtatggctttagattcatatcttag--caatgaaaatgtttttttcagacaaattcgttttagtttggcagtttgggtaggtgctaggtgcagctttataagagtgatgtcacgttaaaatcttagccagatatcaaaataacttttgtgacaaattctgtttcttgggctgttacagGATGTGTATCTGCAGACTACTTGCCTTGCTACGTTGGCTAACATGGCACCTCATGCCCATCATTTAAGTGCATATGCCTCACAGAGGCTTGTCAGCCTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393515|gb|EV263390.1|EV263390
EST:     TGGTCGTAATTCTTATCAGAACTGTACAGTATAATTTGTCAAAACTACGG                         GATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACGTGGCACCT
genomic: TGGTCGTAATTCTTATCAGAACTGTACAGTATAATTTGTCAAAACTACGGgtataaatct ... attatgatagGATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACGTGGCACCT
EST: gi|9898564|gb|BE607532.1|BE607532
EST:     TGGTCGTAATTCTTATCAGAACTGTACAGTATAATTTGTCAAAACTACGG                         GATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACGTGGCACCT
genomic: TGGTCGTAATTCTTATCAGAACTGTACAGTATAATTTGTCAAAACTACGGgtataaatct ... attatgatagGATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACGTGGCACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtatggaaaaaatacgtaatataaatttctgttatgtattgaattatgatagGATGTCTATCTCCAAACAACATGCCTGGCAACCTTGGCAAACGTGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTT
                   taatataaatttctgt  TA-rich tract