Sequence
atgc intronic sequence ATGC exonic sequencegttcctatttcaacttttttctcagcagtttatggaatagctttcacccattctgtctcttaagaagtctttagtgtttgcaaacatgttagattttgtgaatgaagtctgttgtttactccacacttgttcaaaactcatcatgatgtaaataaaactgattttccttaatctactttattcagGTTTTAGGCTAGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGA
Basic information
species | Glycine max |
transcript | GLYMA10G37890.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G37890.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os10g40290.1 (Oryza sativa), 3'ss of exon 9
gttcctatttcaacttttttctcagcagtttatggaatagctttcacccattctgtctcttaagaagtctttagtgtttgcaaacatgttagattttgtgaatgaagtctgt-tgtttactccacacttgttcaaaactcatcatgatgtaaataaaactgattttccttaatctactttattcagGTTTTAGGCTAGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGA---
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----------------------------------------------------------------------------attattcagat-ttagattccattgaacaggcatatgtgagatttctggattcaagttgttgtcttcgtgacattcttcagagt------tctgaatctgtctg---cagGACTCAGGAATGCAATGTTGACGGCTCTGAAGCCGTTCCA---AAATGAACAGGGTGTAGGGATGTTCATAAATTCTTGTTTTGCACATTGCCAGAGTGAGCT
upper sequence: GLYMA10G37890.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv16s0050g00570.t01 (Vitis vinifera), 3'ss of exon 10
gttcctatttcaacttttttctcagcagtttatggaatagctttcacccattctgtctcttaagaagtctttagtgtttgcaaacatgttagattttgtgaatgaagtctgttgtttactccacacttgttcaaaactcatcatgatgtaaataaaactgattttccttaatctactttattcagGTTTTAGGCTAGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGA
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------------------------------------------------------------------caattaagtagaaggaaac-cattaagtaatatttatgaagttta-----------aaaattttaaagtatccattttggtcca-------tttattactttcaattttcgttgttcagGTTTTAGGAAAGATATGCTTACAGCTTTGAACCAATTCTATACTTATTCAAGAAGAGGAGGGATGTTTATAAATTCATGCTTTGCTCATTGCCAAAGTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaaaactcatcatgatgtaaataaaactgattttccttaatctactttattcagGTTTTAGGCTAGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGA
tctacttt CT-rich tract
taaataaaactgattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcctatttcaacttttttctcagcagtttatggaatagctttcacccattctgtctcttaagaagtctttagtgtttgcaaacatgttagattttgtgaatgaagtctgttgtttactccacacttgttcaaaactcatcatgatgtaaataaaactgattttccttaatctactttattcagGTTTTAGGCTAGACATGCTTGGAGCTTTGAGACCGTTCTATATGAATTCAAGAAGAGGGGGGATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG