1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atgaattatgatgcaaaatttgaggtacttgatcgcacgtttaaacatttgatcctttagttattgtcttatatgaaaatgaaatgacattgtttttcagGGAAACTTGTGGAGTATGATGAGCCGATGAACTTGATAAAGAGAGAAGGATCACTGTTTGGGAAGCTTGTTAAGGAATACTGGTCTCATTTTCAGTCTGC
species | Glycine max |
transcript | GLYMA10G37160.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATCAGTGATG GGAAACTTGTGGAGTATGATGAGCCGATGAACTTGATAAAGAGAGAAGGATEST: gi|208066376|gb|GD863095.1|GD863095
genomic: GATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATCAGTGATGgtaagtttta ... tgtttttcagGGAAACTTGTGGAGTATGATGAGCCGATGAACTTGATAAAGAGAGAAGGAT
EST: CAGGATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATCAGTGATG GGAAACTTGTGGAGTATGATGAGCCGATGAACTTGATAAAGAGAGAAGGATEST: gi|208058628|gb|GD857764.1|GD857764
genomic: CAGGATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATCAGTGATGgtaagtttta ... tgtttttcagGGAAACTTGTGGAGTATGATGAGCCGATGAACTTGATAAAGAGAGAAGGAT
EST: CAGGATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATCAGTGATG GGAAACTTGTGGAGTATGATGAGCCGATGAACTTGATAAAGAGAGAAGGAT
genomic: CAGGATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATCAGTGATGgtaagtttta ... tgtttttcagGGAAACTTGTGGAGTATGATGAGCCGATGAACTTGATAAAGAGAGAAGGAT
catttgatcctttagttattgtcttatatgaaaatgaaatgacattgtttttcagGGAAACTTGTGGAGTATGATGAGCCGATGAACTTGATAAAGAGAGAAGGATCACTGTTTGGGAAGCTTGTTAAGGAATACTGGTCTCATTTTCAGTCTGC
atttgat putative branch site (score: 5)
ttgtttttc putative PPT
ttatatgaaaatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaattatgatgcaaaatttgaggtacttgatcgcacgtttaaacatttgatcctttagttattgtcttatatgaaaatgaaatgacattgtttttcagGGAAACTTGTGGAGTATGATGAGCCGATGAACTTGATAAAGAGAGAAGGATCACTGTTTGGGAAGCTTGTTAAGGAATACTGGTCTCATTTTCAGTCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - tgatgca
- - - - - - - - - - - - gtacttg
- - - - - - - - - - - - - - - - -cgcacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaaa