Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctaaatattttaaactgctttggttggtttggtttggtttgtttatcacattgtgttattttttaatgtactgacgattgtcttttttcctctttacagTTGGATTTCCACAG

Basic information

species Glycine max
transcript GLYMA10G36770.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18733034|gb|BM527388.1|BM527388
EST:     TGGTGATGCAGGAAACATGTATGCTGCCCAGGGTTCAGGAGCCAGGGCAG                         TTGGATTTCCACAG
genomic: TGGTGATGCAGGAAACATGTATGCTGCCCAGGGTTCAGGAGCCAGGGCAGgtgctaaata ... ctctttacagTTGGATTTCCACAG
EST: gi|11413709|gb|BF425720.1|BF425720
EST:     TGGTGATGCAGGAAACATGTATGCTGCCCAGGGTTCAGGAGCCAGGGCAG                         TTGGATTTCCACAG
genomic: TGGTGATGCAGGAAACATGTATGCTGCCCAGGGTTCAGGAGCCAGGGCAGgtgctaaata ... ctctttacagTTGGATTTCCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcacattgtgttattttttaatgtactgacgattgtcttttttcctctttacagTTGGATTTCCACAG
                        tactgac  putative branch site (score: 1)
                                 ttgtcttttttcctct  putative PPT
     attgtgttatttttta  TA-rich tract