1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctttctttttaccgacaaaatgtagaccatcctttgctgttgttaagataccaggtaaataaaacatgtcatttatacttcttcctctacaaccttgcagATACTGATAAGCAAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGATCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATAC
species | Glycine max |
transcript | GLYMA10G36210.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTCCATTTTTCTATACTTGGTAGTATTACATGAAGCATTTGGTAGTTCTG ATACTGATAAGCAAGCGAAAGEST: gi|6666544|gb|AW278011.1|AW278011
genomic: GTCCATTTT-CTATACTTGG-AG-AT-ACATGAAGCATTTGGTAGTTCTGgtatgctttc ... aaccttgcagATACTGATAAGCAAGCGAAAG
EST: CATCGTCCATTTTCTATACTTGGAGATACATGAAGCATTTGGTAGTTCTG ATACTGATAAGCAAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGAT
genomic: CATCGTCCATTTTCTATACTTGGAGATACATGAAGCATTTGGTAGTTCTGgtatgctttc ... aaccttgcagATACTGATAAGCAAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGAT
agataccaggtaaataaaacatgtcatttatacttcttcctctacaaccttgcagATACTGATAAGCAAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGATCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATAC
cttcttcctctaca CT-rich tract
taaataaaacatgtca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttctttttaccgacaaaatgtagaccatcctttgctgttgttaagataccaggtaaataaaacatgtcatttatacttcttcctctacaaccttgcagATACTGATAAGCAAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGATCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATAC
- - - - - accgaca
- - - - - - - - - aatgtag
- - - - - - - - - - - - - - - cctttgc
- - - - - - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgtc