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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgtgctgttctgtaattactaattagttgtttctagatatgcactatatcagtcacatgtctatatttgttttacttatattatctgtattgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA

Basic information

species Glycine max
transcript GLYMA10G35560.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35560.2 (Glycine max), 3'ss of exon 10
lower sequence: AT1G48850.3 (Arabidopsis thaliana), 3'ss of exon 10
gtatttgtgctgttctgtaattactaattagttgtttctagatatgcactatatcagtcacatgtctatatttgttttacttatattatctgtattga-caatc-----agGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA----
                           ||||||   ||| | |||  | ||| ||| | | |   ||| |||| |  |      |||     |||||  ||||      |||| || || || ||||| ||||| || || |||||| |||| ||||||||||||||||||||||||    
--------------------------gttagttaagtcttg-tatttaatatgtcaataata-aactacatttctcctgagagaattcctaatattggtcaatttgtatagGGAGGGATCTCAAATGGTGAAATAATAAACATGAGAGTAGCCTTCAAGCCAACATCAACAATTGGAGTAA

upper sequence: GLYMA10G35560.2 (Glycine max), 3'ss of exon 10
lower sequence: AT1G48850.2 (Arabidopsis thaliana), 3'ss of exon 10
gtatttgtgctgttctgtaattactaattagttgtttctagatatgcactatatcagtcacatgtctatatttgttttacttatattatctgtattga-caatc-----agGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA
                           ||||||   ||| | |||  | ||| ||| | | |   ||| |||| |  |      |||     |||||  ||||      |||| || || || ||||| ||||| || || |||||| |||| ||||||||||||||||||||||||
--------------------------gttagttaagtcttg-tatttaatatgtcaataata-aactacatttctcctgagagaattcctaatattggtcaatttgtatagGGAGGGATCTCAAATGGTGAAATAATAAACATGAGAGTAGCCTTCAAGCCAACATCAACAATTGGA

upper sequence: GLYMA10G35560.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv13s0019g04190.t01 (Vitis vinifera), 3'ss of exon 10
gtatttgtgctgttctgtaattactaat---tagttgtttctagatatgcactatatcagtcacatgtctatatttgttttacttatattatctgtattgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA
||| ||||  ||| || |||  | |  |   |  |||    ||||| ||   |  | || |    |    || ||   |    | | ||  | | |  |||||| ||||| ||||| || || ||||||||||| || || ||||||| ||||||||||||||| |||||||||
gtacttgttatgtactttaagcatttgtatgtgtttgggattagatttgttatgcacca-ttttttaagcatcttcagtcc-ttgagatcgtttctgctgacaaacagGGCGGAATATCAAACGGGGAAATCATAAACATAAGAATAGGTTTCAAGCCAACATCTACAATTGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16276418|gb|BI941848.1|BI941848
EST:     ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG                         GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTNTCAAGCCA
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: gi|16276792|gb|BI942046.1|BI942046
EST:     ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG                         GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: gi|193486868|gb|FK450449.1|FK450449
EST:     ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG                         GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: gi|120532705|gb|EH260838.1|EH260838
EST:     ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG                         GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: gi|10843361|gb|BF066663.1|BF066663
EST:     ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG                         GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: gi|254333630|gb|GR848548.1|GR848548
EST:     ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG                         GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: gi|33387796|gb|CA851003.1|CA851003
EST:     ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG                         GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: gi|208247306|gb|GE048950.1|GE048950
EST:     CAAGAACAAATCGCTCTGGTGGGATACAG                         GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
genomic: CAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: gi|16277466|gb|BI942396.1|BI942396
EST:     ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG                         GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATATCTTTCAAGCCA
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: gi|19053065|gb|BM731732.1|BM731732
EST:     ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG                         GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: gi|19268860|gb|BM885116.1|BM885116
EST:     ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG                         GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: gi|16282970|gb|BI945300.1|BI945300
EST:     ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG                         GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: gi|207808737|gb|GD776748.1|GD776748
EST:     ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG                         GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
EST: gi|7691321|gb|AW759514.1|AW759514
EST:     ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAG                         GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA
genomic: ATGAACATGGAAACACAAGAACAAGAACAAATCGCTCTGGTGGGATACAGgtatttgtgc ... tgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatcagtcacatgtctatatttgttttacttatattatctgtattgacaatcagGGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA
                                          tattgac  putative branch site (score: 2)
                tatatttgttttactt  TA-rich tract