1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ccccctagcactcacttgtataaattcaacttcttaatcctatcatattttgagttgtttcaaacttctatttttcttattaaataatgtaatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGGAAAAAGGCTATTGAAGGACTTCAAAACCGGTGAATTTATTCTGGTTTTG
species | Glycine max |
transcript | GLYMA10G34430.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGGEST: gi|31473611|gb|CD415624.1|CD415624
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
EST: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA CCTAAAAAGGTAATGTCGTTTGAGGEST: gi|308098869|gb|HO760710.1|HO760710
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGG
EST: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGGEST: gi|15813090|gb|BI785365.1|BI785365
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
EST: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGGEST: gi|193676146|gb|FK618298.1|FK618298
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
EST: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGGEST: gi|31305430|gb|CD390633.1|CD390633
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
EST: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGTEST: gi|22932985|gb|BU550124.1|BU550124
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
EST: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACA CCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
genomic: ATGATTTAAGCATCCAAGTGGCTAGTCCATCAAATTTCAAGATTTGCACAgtaagttttc ... aatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGG
tattttgagttgtttcaaacttctatttttcttattaaataatgtaatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGGAAAAAGGCTATTGAAGGACTTCAAAACCGGTGAATTTATTCTGGTTTTG
tttcaaacttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccccctagcactcacttgtataaattcaacttcttaatcctatcatattttgagttgtttcaaacttctatttttcttattaaataatgtaatggtgcagCCTAAAAAGGTAATGTCGTTTGAGGACGCAAAGCAAAGAGCATGGCAGTGGAAAAAGGCTATTGAAGGACTTCAAAACCGGTGAATTTATTCTGGTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
cccccta
- - - - cactcac
- - - - - - - - - - - - - caacttc