1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tcagtatgcttttagtacttctcctcttctttttttttttaaaatactaaccttttaagtgactttttatcattaaccattacttatttgtggtaatcagCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAG
species | Glycine max |
transcript | GLYMA10G34370.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GGTCGTGCTTTCCAAAACTGGATGCCATTAAAAGTGCAACAGCTGATATT CTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAATEST: gi|22524365|gb|BU083176.1|BU083176
genomic: GGTCGTGCTTTCCAAAACTGGATGCCATTAAAAGTGCAACAGCTGATATTgtaagtcaat ... tggtaatcagCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAAT
EST: GGTCGTGCTTTCCAAAACTGGATGCCATTAAAAGTGCAACAGCTGATATT CTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAA-TEST: gi|31311023|gb|CD396226.1|CD396226
genomic: GGTCGTGCTTTCCAAAACTGGATGCCATTAAAAGTGCAACAGCTGATATTgtaagtcaat ... tggtaatcagCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAAT
EST: CCATTAAAAGTGCAACAGCTGATATT CTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAATEST: gi|9564018|gb|BE473527.1|BE473527
genomic: CCATTAAAAGTGCAACAGCTGATATTgtaagtcaat ... tggtaatcagCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAAT
EST: GGTCGTGCTTTCCAAAACTGGATGCCATTAAAAGTGCAACAGCTGATATT CTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAATEST: gi|58018836|gb|CX705578.1|CX705578
genomic: GGTCGTGCTTTCCAAAACTGGATGCCATTAAAAGTGCAACAGCTGATATTgtaagtcaat ... tggtaatcagCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAAT
EST: AAGTGCAACAGCTGATATT CTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAAT
genomic: AAGTGCAACAGCTGATATTgtaagtcaat ... tggtaatcagCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAAT
actaaccttttaagtgactttttatcattaaccattacttatttgtggtaatcagCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAG
actttttatcattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagtatgcttttagtacttctcctcttctttttttttttaaaatactaaccttttaagtgactttttatcattaaccattacttatttgtggtaatcagCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAG
- -gtatgct
- - - - - - - - -cttctcc
- - - - - - - - - - - - - - - - - - - - - - -actaacc