1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttaagcatggccacccttcatttatacatttcatgtctttttattctcttatttgttgagttattatttcaatcacaaagttggcaattgcaataccagGTATATAGCGATGGAAATCCTTATGGAATAGCTGAAGGTATTGTTTTCAGTATGCCATGCCGATCAAAG
species | Glycine max |
transcript | GLYMA10G34150.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGATCTTTAAGTA-CTCCTACTCCCGAGG-TGATTGGTTTTCTTTCTG-T GTATATAGCGATGGAAATNCT-ATGGAATAGCTGAAAGTATTGTTT-CAGEST: gi|254344943|gb|GR851426.1|GR851426
genomic: AGATCTTTA-GTAACTCCTACTCCCGAGGGTGATTGGTTTTCTT-CTGGTgtaagttgat ... gcaataccagGTATATAGCGATGGAAATCCTTATGGAATAGCTGAAGGTATTGTTTTCAG
EST: AAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGGTTTTCTTCTGGT GTATATAGCAATGGAAATCCTTATGGGAATAGCTGAAGGTATTGTTTTCAGEST: gi|27426251|gb|CA937771.1|CA937771
genomic: AAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGG-TTTTCTTCTGGTgtaagttgat ... gcaataccagGTATATAGCGATGGAAATCCTTATGG-AATAGCTGAAGGTATTGTTTTCAG
EST: TAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGT GTATATAGCGATGGA
genomic: TAAGATCTTTAGTAACTCCTACTCCCGAGGGTGATTGGTTTTCTTCTGGTgtaagttgat ... gcaataccagGTATATAGCGATGGA
tctcttatttgttgagttattatttcaatcacaaagttggcaattgcaataccagGTATATAGCGATGGAAATCCTTATGGAATAGCTGAAGGTATTGTTTTCAGTATGCCATGCCGATCAAAG
agttattatttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaagcatggccacccttcatttatacatttcatgtctttttattctcttatttgttgagttattatttcaatcacaaagttggcaattgcaataccagGTATATAGCGATGGAAATCCTTATGGAATAGCTGAAGGTATTGTTTTCAGTATGCCATGCCGATCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG