Sequence
atgc intronic sequence ATGC exonic sequencegtagcctttcagttgcttttttatggagttttttgtttagggagagtattttctgcacttcttttcacgcatcaatgtgtattgtgttgtcagGTTTAAGTCATTCAATATTATGTTTGAGGAACTCCATCAGAAACAATCTCAATGGACAGTTCCTGACACTGAGTTGCGAGAGTCTCTTAGGCTTGCAGTT
Basic information
species | Glycine max |
transcript | GLYMA10G34000.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G34000.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G03540.1 (Arabidopsis thaliana), 3'ss of exon 10
gtagcctttcagttgcttttttatggagttttttgtttagggagagtattt-tctgcacttcttttcacgcatcaatgtgtattgtgttgt-cagGTTTAAGTCATTCAATATTATGTTTGAGGAACTCCATCAGAAACAATCTCAATGGACAGTTCCTGACACTGAGTTGCGAGAGTCTCTTAGGCTTGCAGTT
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gtaagtcctaaa---catgtaaaataaacacagtaattggcaaatgtttatatatttggtaatgatgataaatctgtaaaaaaaaaatggaacagGTTCAAGATGTTCAATATGCAGTTTGATGAGTTGCATCAGAGACAATCGCAATGGACAGTTCCAGACACAGAGTTAAGAGAGTCACTAAGACTTGCTGTT
upper sequence: GLYMA10G34000.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv13s0073g00170.t01 (Vitis vinifera), 3'ss of exon 10
--------------gtagcctttcagttgcttttttatggagttttttgtttagggagagta--ttttctgcacttcttttcacgcatc----aatgtgtattgtgttgtcagGTTTAAGTCATTCAATATTATGTTTGAGGAACTCCATCAGAAACAATCTCAATGGACAGTTCCTGACACTGAGTTGCGAGAGTCTCTTAGGCTTGCAGTT
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gttatgattaagttgcatccttcttatagattgctttccttcttttctttaaataatatgtaatcttcttataaatattttaacctggctggagaagtgccttttgttctcagGTTCAAGACATTTAATATGCAGTTTGAGGAGCTGCATCAGAAACAATCTCAGTGGACAGTTCCTGACACTGAGCTGCGAGAGTCTCTGAGGCTTGCAGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151397587|gb|EV267460.1|EV267460EST: GGTGGAACCGGAAGCAGTAGCGGTGCTTCAAGAGCAATTGTTAAAGACAG GTTTAAGTCATTCAATATTATGTTTGAGGAACTCCATCAGAAACAATCTCA
genomic: GGTGGAACCGGAAGCAGTAGCGGTGCTTCAAGAGCAATTGTTAAAGACAGgtagcctttc ... gtgttgtcagGTTTAAGTCATTCAATATTATGTTTGAGGAACTCCATCAGAAACAATCTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agggagagtattttctgcacttcttttcacgcatcaatgtgtattgtgttgtcagGTTTAAGTCATTCAATATTATGTTTGAGGAACTCCATCAGAAACAATCTCAATGGACAGTTCCTGACACTGAGTTGCGAGAGTCTCTTAGGCTTGCAGTT
agtatttt TA-rich tract