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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcctttcagttgcttttttatggagttttttgtttagggagagtattttctgcacttcttttcacgcatcaatgtgtattgtgttgtcagGTTTAAGTCATTCAATATTATGTTTGAGGAACTCCATCAGAAACAATCTCAATGGACAGTTCCTGACACTGAGTTGCGAGAGTCTCTTAGGCTTGCAGTT

Basic information

species Glycine max
transcript GLYMA10G34000.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34000.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G03540.1 (Arabidopsis thaliana), 3'ss of exon 10
gtagcctttcagttgcttttttatggagttttttgtttagggagagtattt-tctgcacttcttttcacgcatcaatgtgtattgtgttgt-cagGTTTAAGTCATTCAATATTATGTTTGAGGAACTCCATCAGAAACAATCTCAATGGACAGTTCCTGACACTGAGTTGCGAGAGTCTCTTAGGCTTGCAGTT
|||     | |    | | |  |   |      |  || |  |  || | | | |    |  |  | |   |||  |    |     | |  |||||| |||   ||||||||   |||||| ||  | ||||||| |||||| |||||||||||||| ||||| |||||  ||||||| || || ||||| |||
gtaagtcctaaa---catgtaaaataaacacagtaattggcaaatgtttatatatttggtaatgatgataaatctgtaaaaaaaaaatggaacagGTTCAAGATGTTCAATATGCAGTTTGATGAGTTGCATCAGAGACAATCGCAATGGACAGTTCCAGACACAGAGTTAAGAGAGTCACTAAGACTTGCTGTT

upper sequence: GLYMA10G34000.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv13s0073g00170.t01 (Vitis vinifera), 3'ss of exon 10
--------------gtagcctttcagttgcttttttatggagttttttgtttagggagagta--ttttctgcacttcttttcacgcatc----aatgtgtattgtgttgtcagGTTTAAGTCATTCAATATTATGTTTGAGGAACTCCATCAGAAACAATCTCAATGGACAGTTCCTGACACTGAGTTGCGAGAGTCTCTTAGGCTTGCAGTT
              | | ||||    | | ||  ||      |||| | |  |      |||   ||  |  |  | |||| ||    |     | |||  || |||| ||||||| ||| |||| |||||   ||||||||| || ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||
gttatgattaagttgcatccttcttatagattgctttccttcttttctttaaataatatgtaatcttcttataaatattttaacctggctggagaagtgccttttgttctcagGTTCAAGACATTTAATATGCAGTTTGAGGAGCTGCATCAGAAACAATCTCAGTGGACAGTTCCTGACACTGAGCTGCGAGAGTCTCTGAGGCTTGCAGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397587|gb|EV267460.1|EV267460
EST:     GGTGGAACCGGAAGCAGTAGCGGTGCTTCAAGAGCAATTGTTAAAGACAG                         GTTTAAGTCATTCAATATTATGTTTGAGGAACTCCATCAGAAACAATCTCA
genomic: GGTGGAACCGGAAGCAGTAGCGGTGCTTCAAGAGCAATTGTTAAAGACAGgtagcctttc ... gtgttgtcagGTTTAAGTCATTCAATATTATGTTTGAGGAACTCCATCAGAAACAATCTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agggagagtattttctgcacttcttttcacgcatcaatgtgtattgtgttgtcagGTTTAAGTCATTCAATATTATGTTTGAGGAACTCCATCAGAAACAATCTCAATGGACAGTTCCTGACACTGAGTTGCGAGAGTCTCTTAGGCTTGCAGTT
      agtatttt  TA-rich tract