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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttctgtttgctgaggttactactgtattaaatattccatcttacaaacttgtgaatgatacatttttggtatttatctagCTTATCACTGAAGAGCTTGGCTTGAATCTTGAAAAAGTAGATCTGGAGGTGTTTGGCTCTTGCAAGAAG

Basic information

species Glycine max
transcript GLYMA10G33680.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16284045|gb|BI945876.1|BI945876
EST:     AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAA                         CTTATCACTGAAGAGCTTGGCTTGAATCTTGAAAAAGTAGATCTGGAGGTG
genomic: AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAAgtaagttttc ... atttatctagCTTATCACTGAAGAGCTTGGCTTGAATCTTGAAAAAGTAGATCTGGAGGTG
EST: gi|18041129|gb|BM309423.1|BM309423
EST:     AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAA                         CTTATCACTGAAGAGCTTGGCTTGAATCTTGAAAAAGTAGATCTG
genomic: AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAAgtaagttttc ... atttatctagCTTATCACTGAAGAGCTTGGCTTGAATCTTGAAAAAGTAGATCTG
EST: gi|16277716|gb|BI942526.1|BI942526
EST:     AAAACCGCAAATCTGGTCTCCATGATCTTGCTGTTCTTACAGGAGGTCAA                         CTTATCACTGAAGAGCTTGGCTTGAATCTTGAGAAAGTAGATCTGGAGGTG
genomic: AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAAgtaagttttc ... atttatctagCTTATCACTGAAGAGCTTGGCTTGAATCTTGAAAAAGTAGATCTGGAGGTG
EST: gi|15813269|gb|BI785544.1|BI785544
EST:     TCTTGCTGTTCTTACAGGAGGTCAA                         CTTATCACTGAAGAGCTTGGCTTGAATCTTGAAAAAGTAGATCTGGAGGTG
genomic: TCTTGCTGTTCTTACAGGAGGTCAAgtaagttttc ... atttatctagCTTATCACTGAAGAGCTTGGCTTGAATCTTGAAAAAGTAGATCTGGAGGTG
EST: gi|16278473|gb|BI942922.1|BI942922
EST:     AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAA                         CTTATCACTGAAGAGCTTGGCTTGAATCTTGAAAAAGTAGATCTGGAGGTG
genomic: AAAACCGTAAATCTGGTCTCCAGGATCTTGCTGTTCTTACAGGAGGTCAAgtaagttttc ... atttatctagCTTATCACTGAAGAGCTTGGCTTGAATCTTGAAAAAGTAGATCTGGAGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaaatattccatcttacaaacttgtgaatgatacatttttggtatttatctagCTTATCACTGAAGAGCTTGGCTTGAATCTTGAAAAAGTAGATCTGGAGGTGTTTGGCTCTTGCAAGAAG
            atcttac  putative branch site (score: 3)
                                              tttatct  putative PPT
                                    atttttggtatttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttttctgtttgctgaggttactactgtattaaatattccatcttacaaacttgtgaatgatacatttttggtatttatctagCTTATCACTGAAGAGCTTGGCTTGAATCTTGAAAAAGTAGATCTGGAGGTGTTTGGCTCTTGCAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG