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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatatttattttactatgtatattactttgtatatgtatttctaaattaacatttaagatgtttaatttatggaactgccgctgttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTTGGGGAAATTTTACAACAGGGGTTTGCTAGGATGTCTTAGATTCATGGCG

Basic information

species Glycine max
transcript GLYMA10G32660.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724721|gb|BW677776.1|BW677776
EST:     AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|22929840|gb|BU546979.1|BU546979
EST:     AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|15813749|gb|BI786024.1|BI786024
EST:     AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|13478930|gb|BG508273.1|BG508273
EST:     AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|31305923|gb|CD391126.1|CD391126
EST:     AGTCATTTGTTGTGCCGCGAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaaattaacatttaagatgtttaatttatggaactgccgctgttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTTGGGGAAATTTTACAACAGGGGTTTGCTAGGATGTCTTAGATTCATGGCG
                                             ttcgcttc  CT-rich tract
     aattaacatttaagat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattatatttattttactatgtatattactttgtatatgtatttctaaattaacatttaagatgtttaatttatggaactgccgctgttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTTGGGGAAATTTTACAACAGGGGTTTGCTAGGATGTCTTAGATTCATGGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG