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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttctttgttcttgttcttgcgtcttgattcttttacttgtttttgttttactcctctgcagtatagcaagtggtaactgtcctacgtttgcagAATGAGGGATATATCACAATACGAGATGTTAAAGGCAGCAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTCAACAAGTTTATTGCTTTCGAGA

Basic information

species Glycine max
transcript GLYMA10G32500.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32500.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G148323_T01 (Zea mays), 3'ss of exon 10
gtttttctttgttcttgttcttgcgtcttgattcttttacttgtttttgttttactcctctgcagtatagcaagtggtaactgtcctacgtttgcagAATGAGGGATATATCACAATACGAGATGTTAAAGGCAGCAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTCAACAAGTTTATTGCTTTCGAGA
                           | ||||||  ||| | ||          |        |  |   || |    | | ||||   | | ||||||||| | ||| | ||  |||| ||  | ||| |  | ||||| || |||||  | ||||||||||||||||||||||||||||| || || || || |
--------------------------gtagattctcatacatattacataaacgttttatctgggcttgataaat----attttcctt--tctacagAATGAGAGCTATTTAACTCTACGGGACTTAAAACGGTGTAAACTCTCAGGAAACATATTCAATATTCTTTTCAATCTCAACAAGTTCATGGCATTTGAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9204760|gb|BE330984.1|BE330984
EST:     TGCTGTCTGAAGATATATTGTGTCAGATTGTGCATATGATTGGACCAGAG                         AATGAGGGATATATCACAATACGAGATGTTAAAGGCAGCAAACTTTCTGGA
genomic: TGCTGTTTGAAGATATATTGTGTCAGATTGTGGATATGATTGGACCAGAGgtttttcttt ... acgtttgcagAATGAGGGATATATCACAATACGAGATGTTAAAGGCAGCAAACTTTCTGGA
EST: gi|21256450|gb|BQ453338.1|BQ453338
EST:     GTTTGAAGATATATTGTGTCAGATTGTGGATATGATTGGACCAGAG                         AATGAGGGATATATCACAATACGAGATGTTAAAGGCAGCAAACTTTCTGGA
genomic: GTTTGAAGATATATTGTGTCAGATTGTGGATATGATTGGACCAGAGgtttttcttt ... acgtttgcagAATGAGGGATATATCACAATACGAGATGTTAAAGGCAGCAAACTTTCTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttgttttactcctctgcagtatagcaagtggtaactgtcctacgtttgcagAATGAGGGATATATCACAATACGAGATGTTAAAGGCAGCAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTCAACAAGTTTATTGCTTTCGAGA
                                tggtaac  putative branch site (score: 2)
     tgtttta  TA-rich tract