1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...actctgaatacaaatacctcttcgttggaattcatggatcattagtgttgatgaggaatatccaagtctggatttgtaatttgacctgttatttctgcagATGCTGTCATCTAAAGATGTCAACTTTGTCGGGTACACATATAAGAACTATGAAATCGTGAATGATGATCAACTACCTGAAATTG
species | Glycine max |
transcript | GLYMA10G32480.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTTGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAG ATGCTGTCATCTAAAGATGTCAACTTTGTCGGGTACACATAEST: gi|6726786|gb|AW311140.1|AW311140
genomic: GTTGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAGgttaattctc ... atttctgcagATGCTGTCATCTAAAGATGTCAACTTTGTCGGGTACACATA
EST: GTTGACAACCAAACTCAACCTTNCTCAAAATCAGGCCCATGGAGAAAG ATGCTGTCATCTAAAGATGTCAACTTTGTCGGGTACACATATAAGAACTATEST: gi|13311690|gb|BG405341.1|BG405341
genomic: GTTGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAGgttaattctc ... atttctgcagATGCTGTCATCTAAAGATGTCAACTTTGTCGGGTACACATATAAGAACTAT
EST: GTTGACAACCAAACTCAACCTTNCTCAAAATCAGGCCCATGGAGAAAG ATGCTGTCATCTAAAGATGTCAACTTTGTCGGGTACACATATAAGAACTAT
genomic: GTTGACAACCAAACTCAACCTTCCTCAAAATCAGGCCCATGGAGAAAGgttaattctc ... atttctgcagATGCTGTCATCTAAAGATGTCAACTTTGTCGGGTACACATATAAGAACTAT
tgttgatgaggaatatccaagtctggatttgtaatttgacctgttatttctgcagATGCTGTCATCTAAAGATGTCAACTTTGTCGGGTACACATATAAGAACTATGAAATCGTGAATGATGATCAACTACCTGAAATTG
atttgac putative branch site (score: 4)
ttatttct putative PPT
atttgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actctgaatacaaatacctcttcgttggaattcatggatcattagtgttgatgaggaatatccaagtctggatttgtaatttgacctgttatttctgcagATGCTGTCATCTAAAGATGTCAACTTTGTCGGGTACACATATAAGAACTATGAAATCGTGAATGATGATCAACTACCTGAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
-ctctgaa
- - - - - - - - cctcttc
- - - - - - - - - - - - - - - - catggat
- - - - - - - - - - - - - - - - - - - - - - - gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacctg