Sequence
atgc intronic sequence ATGC exonic sequence...atatatagcttcagttgttttagtagagtaactaggttttacttaatttgacttttgtcatgtgctgaatttaaaggatttcagattgtttgtatgctagGTATGAAGTTGACACAGATGCATTTCTTTCTGTTTTAGCCCTTCAACCAATTCCAAACATGGATTCTGTCCCCACCATTGTTGAG
Basic information
species | Glycine max |
transcript | GLYMA10G32300.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G32300.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G43745.1 (Arabidopsis thaliana), 3'ss of exon 10
atatatagcttcagttgttttagtagagtaactaggttttacttaatttgacttttgtcatgtgctgaatttaaaggatttcagattgtttgtatgctagGTATGAAGTTGACACAGATGCATTTCTTTCTGTTTTAGCCCTTCAACCAATTCCAAACATGGATTCTGTCCCCACCATTGTTGAG
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tgttctgaaacctgtcagaaaactggaatgctagtggtaaaagatatggaatctcaatactttgtaaaagaggaatcaattaagttaaacattgtttcagGTATGAAGTTGATACAGACGCATTTCTTTCTGTATTGGCCCTTCAACCTATACAAAAGATGGAATCGATCCCAACCATAGTAGAG
upper sequence: GLYMA10G32300.1 (Glycine max), 3'ss of exon 10
lower sequence: AT5G02940.1 (Arabidopsis thaliana), 3'ss of exon 10
-----------------------atatatagcttcagttgttttagtagagtaactaggttttact-taatttgacttttgtca----tgtgctgaatttaaaggatttcagattgtttgtatgctagGTATGAAGTTGACACAGATGCATTTCTTTCTGTTTTAGCCCTTCAACCAATTCCAAACATGGATTCTGTCCCCACCATTGTTGAG
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gtaagaattaactacttctcattatggtttagtttgtttggttctgaatgaaaacaaagtataaatattttctgaaacctgtcagtagtttgtaaaagagaaatcaattaagttaaacattgtttcagGTATGAAGTTGATACAGACGCATTTCTTTCTGTATTGGCCCTTGAACCTATACAAAAGATGGAATCCATCCCAACCATTGTAGAG
upper sequence: GLYMA10G32300.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 3'ss of exon 10
-atatatagcttcagttgttttagtagagtaactaggttttacttaatttgacttttg---tcatgtgctgaatttaaaggatttcagattgtttgtatgctagGTATGAAGTTGACACAGATGCATTTCTTTCTGTTTTAGCCCTTCAACCAATTCCAAACATGGATTCTGTCCCCACCATTGTTGAG
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tcttgacaagtcca--tggtttaatctgtttac-aagttgcacaaaccaaaattatcgaatttctctgttgaagtctactgattttagatt-ctaatttatcagGTATGAAGTTGATACAGATGCATTTCTATCTGTACTAGCCCTTCAACCTATTTCAAAAATGACTTCTGTCCCCACCATTGTTGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6481623|gb|AW200894.1|AW200894EST: GCAGCTAACAGGGCACGTGCAATAATTATACTGCCAACAAAAGGAGATCG GTATGAAGTTGACACAGATGCATTTCTTTCTGTTTTAGCCCTTCAACCAAT
genomic: GCAGCTAACAGGGCACGTGCAATAATTATACTGCCAACAAAAGGAGATCGgtaagagttg ... tgtatgctagGTATGAAGTTGACACAGATGCATTTCTTTCTGTTTTAGCCCTTCAACCAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttgacttttgtcatgtgctgaatttaaaggatttcagattgtttgtatgctagGTATGAAGTTGACACAGATGCATTTCTTTCTGTTTTAGCCCTTCAACCAATTCCAAACATGGATTCTGTCCCCACCATTGTTGAG
atttgac putative branch site (score: 4)
aatttaaaggattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atatatagcttcagttgttttagtagagtaactaggttttacttaatttgacttttgtcatgtgctgaatttaaaggatttcagattgtttgtatgctagGTATGAAGTTGACACAGATGCATTTCTTTCTGTTTTAGCCCTTCAACCAATTCCAAACATGGATTCTGTCCCCACCATTGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - -gcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgaa