1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttggtctgttccatgatcttcttgaaagtctgagatcttgttgaagtttagaagaaacttcctactgctgttcttttaataacaagtgatttctgtgtagATATGAACTTTGTTTTACTGGAGAGAAGATGGTCAAGGTTACACCAGCAACCCAGTTGCATGACCCTGTCACAGAAAAGTCTCAAAATCACCACCCACAT
species | Glycine max |
transcript | GLYMA10G31960.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCTCGTTTGAAGAAGGGAGAAGTTTTGTATTTGGAGACACATTTGTCCAG ATATGAACTTTGTTTTACTGGAGAGAAGATGGTCAAGGTTACACCAGCAACEST: gi|254344049|gb|GR850959.1|GR850959
genomic: GCTCGTTTGAAGAAGGGAGAAGTTTTGTATTTGGAGACACATTTGTCCAGgtatttttta ... ttctgtgtagATATGAACTTTGTTTTACTGGAGAGAAGATGGTCAAGGTTACACCAGCAAC
EST: GCTCGTTTGAAGAAGGGAGAAGTTTTGTATTTGGAGACACATTTGTCCAG ATATGAACTTTGTTTTACTGGAGAGAAGATGGTCAAGGTTACACCAGCAACEST: gi|17963267|gb|BM270018.1|BM270018
genomic: GCTCGTTTGAAGAAGGGAGAAGTTTTGTATTTGGAGACACATTTGTCCAGgtatttttta ... ttctgtgtagATATGAACTTTGTTTTACTGGAGAGAAGATGGTCAAGGTTACACCAGCAAC
EST: GCTCGTTTGAAGAAGGGAGAAGTTTTGTATTTGGAGACACATTTGTCCAG ATATGAACTTTGTTTTACTGGAGAGAAGATGGTCAAGGTTACACCAGCAAC
genomic: GCTCGTTTGAAGAAGGGAGAAGTTTTGTATTTGGAGACACATTTGTCCAGgtatttttta ... ttctgtgtagATATGAACTTTGTTTTACTGGAGAGAAGATGGTCAAGGTTACACCAGCAAC
gtttagaagaaacttcctactgctgttcttttaataacaagtgatttctgtgtagATATGAACTTTGTTTTACTGGAGAGAAGATGGTCAAGGTTACACCAGCAACCCAGTTGCATGACCCTGTCACAGAAAAGTCTCAAAATCACCACCCACAT
taataac putative branch site (score: 1)
tttctgt putative PPT
ttcttttaataacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggtctgttccatgatcttcttgaaagtctgagatcttgttgaagtttagaagaaacttcctactgctgttcttttaataacaagtgatttctgtgtagATATGAACTTTGTTTTACTGGAGAGAAGATGGTCAAGGTTACACCAGCAACCCAGTTGCATGACCCTGTCACAGAAAAGTCTCAAAATCACCACCCACAT
- -gtctgtt
- - - - - -catgatc
- - - - - - - - - - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - gaagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagtga