1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tatctttaatatttttacgtacgtaagtgcagacaggattttggtatagagatgtttataatgcttatattttaaatctctggttctgtttctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGACCTATTATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAG
species | Glycine max |
transcript | GLYMA10G31310.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGAEST: gi|193654999|gb|FK598711.1|FK598711
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGAEST: gi|193509392|gb|FK468844.1|FK468844
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGAEST: gi|9898819|gb|BE607787.1|BE607787
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGAEST: gi|193451064|gb|FK415692.1|FK415692
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGAEST: gi|193488290|gb|FK456113.1|FK456113
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: ATGTGGTTCGTTGTGCTGTAATCGCAAGTCCAGGATTTACAAAG GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGAEST: gi|14011604|gb|BG726526.1|BG726526
genomic: ATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: GATTTACAAAG GATCAGTTTCACCGTCACTTATTGATAGAAGCAGAACGAAGACAGTTGCGAEST: gi|193472093|gb|FK437096.1|FK437096
genomic: GATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGAEST: gi|193483997|gb|FK451966.1|FK451966
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGAEST: gi|23731912|gb|BU764103.1|BU764103
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGAEST: gi|10231661|gb|BE800549.1|BE800549
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGAEST: gi|7690977|gb|AW759112.1|AW759112
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: GTAATTGCAAGTCCAGGATTTACAAAG GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGAEST: gi|193516546|gb|FK475684.1|FK475684
genomic: GTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
EST: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAG GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAAGACAGTTGCGEST: gi|31471412|gb|CD413440.1|CD413440
genomic: ATTTCAATGTGGTTCGTTGTGCTGTAATTGCAAGTCCAGGATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAA-GACAGTTGCG
EST: GATTTACAAAG GATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
genomic: GATTTACAAAGgtaagtaatt ... tctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGA
atagagatgtttataatgcttatattttaaatctctggttctgtttctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGACCTATTATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAG
ttctgtttctgtttc CT-rich tract
atgtttataatgctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatctttaatatttttacgtacgtaagtgcagacaggattttggtatagagatgtttataatgcttatattttaaatctctggttctgtttctgtttcagGATCAGTTTCACCGTCACTTATTTTTGGAAGCAGAACGAAGACAGTTGCGACCTATTATTGAAAACAAATCCCGCATCATTCTTGTGCATACAAGTTCAG
- - - - - - - - - - - - - -tgcagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgctt