Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaacatattgtcccccttttcttattatatctttggtcagtataatgtcattactgatttattatcattttttaatcatttgaaattctttgctttgcagGATGAGAGTGTTATAACTTTGCGGGACCTGAAAGGTGGTAAACTTTCAGGAAGTGTTTTCAACATCCTGTTCAATCTAAATAAGTTCATGGCCTTTGAAA

Basic information

species Glycine max
transcript GLYMA10G30930.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574654|gb|CX547629.1|CX547629
EST:     TGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAG                         GATGAGAGTGTTATAACTTTGCGGGACCTGAAAGGTGGTAAACTTTCAGGA
genomic: TGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAGgtttgccttt ... tgctttgcagGATGAGAGTGTTATAACTTTGCGGGACCTGAAAGGTGGTAAACTTTCAGGA
EST: gi|58019797|gb|CX706539.1|CX706539
EST:     TGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAG                         GATGAGAGTGTTATAACTTTGCGGGACCTGAAAGGTGGTAAACTTTCAGGA
genomic: TGCTCTTTGAGGACATATTGTGTCAGATAATTGACATGATTAAACCTGAGgtttgccttt ... tgctttgcagGATGAGAGTGTTATAACTTTGCGGGACCTGAAAGGTGGTAAACTTTCAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcattactgatttattatcattttttaatcatttgaaattctttgctttgcagGATGAGAGTGTTATAACTTTGCGGGACCTGAAAGGTGGTAAACTTTCAGGAAGTGTTTTCAACATCCTGTTCAATCTAAATAAGTTCATGGCCTTTGAAA
                                        ttctttgcttt  CT-rich tract
     ttactgatttattatc  TA-rich tract