1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaggttgtacattcattttatgagtcaacatataacttatactcagcagcctccttaaatctagttgagaagacaaacaaaaatagcatgatcattttgtaatacttgctcaggttcagGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATATCACCACTTGAGGGTTTCTTAATGGGTTTTGGCTACCACAGACAAACACATGCTG
species | Glycine max |
transcript | GLYMA10G30270.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAGGTTCAGEST: gi|8402399|gb|BE058033.1|BE058033
genomic: CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTT---G---AGgtaggttgta ... tcagg
EST: CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAG GTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATAEST: gi|14991050|gb|BI316723.1|BI316723
genomic: CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgta ... tcaggttcagG--C----TTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA
EST: CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAG GTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA
genomic: CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgta ... tcaggttcagG--C----TTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA
ttgagaagacaaacaaaaatagcatgatcattttgtaatacttgctcaggttcagGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATATCACCACTTGAGGGTTTCTTAATGGGTTTTGGCTACCACAGACAAACACATGCTG
cttgctc CT-rich tract
atcattttgtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttgtacattcattttatgagtcaacatataacttatactcagcagcctccttaaatctagttgagaagacaaacaaaaatagcatgatcattttgtaatacttgctcaggttcagGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATATCACCACTTGAGGGTTTCTTAATGGGTTTTGGCTACCACAGACAAACACATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG