Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttgtacattcattttatgagtcaacatataacttatactcagcagcctccttaaatctagttgagaagacaaacaaaaatagcatgatcattttgtaatacttgctcagGTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATATCACCACTTGAGGGTTTCTTAATGGGTTTTGGCTACCACAGACAAACAC

Basic information

species Glycine max
transcript GLYMA10G30270.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30270.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G413857_T01 (Zea mays), 3'ss of exon 10
gtaggttgtacattcattttatgagtcaacatataacttatactcagcagcctccttaaatctagttgagaagacaaacaaaaatagc-atgatcatttt-----gtaatacttgctcagGTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATATCACCACTTGAGGGTTTCTTAATGGGTTTTGGCTACCACAGACAAACAC
                           |||||| |  | | |   |   |   |||| | |  |     ||  | ||      || || | | |  ||||     |  | |  ||  ||||||||||||||||| ||||| || ||||||||||| ||  || | ||| |    ||  | ||    ||| | ||||| |  ||   | |||| | | | |
-------------------------gtaacatacagttcaaaaa-acttgatcccttcagtacacacaggagtaaaacggctgatggccaaggtggtttttcgtggccaaaactgtgcagGTTCAGGCTTGTGGTTCACTTGTCACAGAAGAGCAGCCCCATGCGATGGTGATCCCGATGGAATACTTCCTCATGGGGTACGGGCTCTACAGGCCATCGC

upper sequence: GLYMA10G30270.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0030g01790.t01 (Vitis vinifera), 3'ss of exon 10
gtaggttgtacattcattttatgagtcaacatataacttatactcagcagcctccttaaatctagttgagaagacaaacaaaaatagcat-gatcattttgtaat--acttgct---cagGTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATATCACCACTTGAGGGTTTCTTAATGGGTTTTGGCTACCACAGACAAACAC
                    |  ||  ||  | |   || |  ||     |||   |   |  | || | ||     |   || || ||| |||     ||| ||  | ||      ||| |||||||||||||||||||||| |||||||| |||||| || ||||| ||   ||  |||||   |||||||||||||| || ||| |||| |||   |
-------------------aaccagggaaattttttgttgtgttctttttcctttctggcttgaatt-ataacctgcattgaagtaccatagattgagatgtgatcaatttatgtaacagATTCAGGCTTGTGGCTCACTAGTGACAGAAGAACACCCATATGCCATGCTAATTCCCATTGAGCTGTTCTTAATGGGTTTCGGGTACTACAGGCAACTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019580|gb|CX706322.1|CX706322
EST:     CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAG                         GTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA
genomic: CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgta ... acttgctcagGTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA
EST: gi|8402399|gb|BE058033.1|BE058033
EST:     CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAG                         GTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA
genomic: CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgta ... acttgctcagGTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA
EST: gi|14991050|gb|BI316723.1|BI316723
EST:     CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAG                         GTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA
genomic: CTGTGTACATGAGCACAAAAATGAACCACAAAATCTGCGCACTTGTTGAGgtaggttgta ... acttgctcagGTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctagttgagaagacaaacaaaaatagcatgatcattttgtaatacttgctcagGTTCAGGCTTGTGGCTCACTAGTAACAGAAGAGCACCCAAATTCCATGATATCACCACTTGAGGGTTTCTTAATGGGTTTTGGCTACCACAGACAAACAC
                                              cttgctc  CT-rich tract
                                atcattttgtaata  TA-rich tract