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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacattttatctttggctttgttctgggtttctctgtaaattttttaatggaattaatcaattatgttttggcagtttgcatatattctatgcttccttcaatcgttaaatgattattcagaatttcttcaattgcagGAGTTTTGGGTGGTCTATCCGTAAAGTCCTCCATTATGACGCGACAGCAGTTGGGGGATAAGTCAACGTCTTGTCATTGTCCTAATGTCCTTGGGTCGTA

Basic information

species Glycine max
transcript GLYMA10G29000.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120492247|gb|EH220414.1|EH220414
EST:     GCCATCCGGTGGATTCAACTTTAATTAGAAGATATTCATGCTCTACTGGG                         GAGTTTTGGGTGGTCTATCCGTAAAGTCCTCCATTATGACGCGACAGCAGT
genomic: GCCATCCGGTGGATTCAACTTTAATTAGAAGATATTCATGCTCTACTGGGgtaacatttt ... tcaattgcagGAGTTTTGGGTGGTCTATCCGTAAAGTCCTCCATTATGACGCGACAGCAGT
EST: gi|6567098|gb|AW234725.1|AW234725
EST:     GCCATCCGGTGGATTCAACTTTAATTAGAAGATATTCATGCTCTACTGGG                         GAGTTTTGGGTGGTCTATCCGTAAAGTCCTCCATTATGACGCGACAGCAGT
genomic: GCCATCCGGTGGATTCAACTTTAATTAGAAGATATTCATGCTCTACTGGGgtaacatttt ... tcaattgcagGAGTTTTGGGTGGTCTATCCGTAAAGTCCTCCATTATGACGCGACAGCAGT
EST: gi|13789680|gb|BG652271.1|BG652271
EST:     GCCATCCGGTGGATTCAACTTTAATTAGAAGATATTCATGCTCTACTGGG                         GAGTTTTGGGTGGTCTATCCGTAAAGTCCTCCATTATGACGCGACAGCAGT
genomic: GCCATCCGGTGGATTCAACTTTAATTAGAAGATATTCATGCTCTACTGGGgtaacatttt ... tcaattgcagGAGTTTTGGGTGGTCTATCCGTAAAGTCCTCCATTATGACGCGACAGCAGT
EST: gi|192301983|gb|FG995153.1|FG995153
EST:     GCCATCCGGTGGATTCAACTTTAATTAGAAGATATTCATGCTCTACTGGG                         GAGTTTTGGGTGGTCTATCCGTAAAGTCCTCCATTATGACGCGACAGCAGT
genomic: GCCATCCGGTGGATTCAACTTTAATTAGAAGATATTCATGCTCTACTGGGgtaacatttt ... tcaattgcagGAGTTTTGGGTGGTCTATCCGTAAAGTCCTCCATTATGACGCGACAGCAGT
EST: gi|13311262|gb|BG404895.1|BG404895
EST:     GCCATCCGGTGGATTCAACTTTAATTAGAAGATATTCATGCTCTACTGGG                         GAGTTTTGGGTGGGCTATCCGTAAAGTCCTCCATTATGACCGCGACAGCAG
genomic: GCCATCCGGTGGATTCAACTTTAATTAGAAGATATTCATGCTCTACTGGGgtaacatttt ... tcaattgcagGAGTTTTGGGTGGTCTATCCGTAAAGTCCTCCATTATGAC-GCGACAGCAG
EST: gi|22931230|gb|BU548369.1|BU548369
EST:     GCCATCCGGTGGATTCAACTTTAATTAGAAGATATTCATGCTCTACTGGG                         GAGTTTTGGGTGGTCTATCCGTAAAGTCCTCCATTATGACGCGACAGCAGT
genomic: GCCATCCGGTGGATTCAACTTTAATTAGAAGATATTCATGCTCTACTGGGgtaacatttt ... tcaattgcagGAGTTTTGGGTGGTCTATCCGTAAAGTCCTCCATTATGACGCGACAGCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattctatgcttccttcaatcgttaaatgattattcagaatttcttcaattgcagGAGTTTTGGGTGGTCTATCCGTAAAGTCCTCCATTATGACGCGACAGCAGTTGGGGGATAAGTCAACGTCTTGTCATTGTCCTAATGTCCTTGGGTCGTA
                                        tttcttc  CT-rich tract
                      ttaaatgattattcag  TA-rich tract