Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctttctatccactgatcttttggtatgctattgaaagatatgatctccttaatgaaaatgtgttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG

Basic information

species Glycine max
transcript GLYMA10G28890.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os07g14270.3 (Oryza sativa), 3'ss of exon 10
gtaagtctttctatccactgatcttttggtatgctattg-------aaagatatgat-ctccttaatgaaaatgtgttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
||| ||| ||||   |||  | |||||    ||  || |       |  ||    |   ||  |||    | ||  | |||| ||||||||||||| || ||||| ||||| ||||| |||| ||||||||||
gtatgtcgttct--tcacctagcttttaccgtgtaatagtttcgttatcgacccaacattctctaacattagtgaat-cttgtagGCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAGAAGGAAGAGGAG

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 10
lower sequence: LOC_Os07g14270.1 (Oryza sativa), 3'ss of exon 10
gtaagtctttctatccactgatcttttggtatgctattg-------aaagatatgat-ctccttaatgaaaatgtgttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG----------------------------------------------------
||| ||| ||||   |||  | |||||    ||  || |       |  ||    |   ||  |||    | ||  | |||| ||||||||||||| || ||||| ||||| ||||| |||| ||||||||||                                                    
gtatgtcgttct--tcacctagcttttaccgtgtaatagtttcgttatcgacccaacattctctaacattagtgaat-cttgtagGCTGAGAAGGCTGCTTTTGACGAGGCAGAGAAAAAGAAGGAAGAGGAGGTAAATTCCTTCACCTTACAATGTTCTAATATGAGGATGATGGATGTACAAC

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0060g01290.t01 (Vitis vinifera), 3'ss of exon 10
-------------------gtaagtctttctatccactg-atcttttggtatgctattgaaagatatgatctccttaatgaaaatgtgt-tcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
                   |    |    | ||  |  | || ||     |   | || | |  |  | |    || |      ||| | | |||||||||||||||||||||||||| ||||| |||||||||||||||||||||
gtatgtgatgctgccttctgcttttgccaccatatagcgcattttccatcagatttttcatatctgggttgatttttaattttgtgtatgttttgcagGCTGAGAAGGCAGCATTTGATGAGGCAGAGAAGAAGAGGGAAGAGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207690344|gb|GD672961.1|GD672961
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|207793849|gb|GD763823.1|GD763823
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|48575646|gb|CO036506.1|CO036506
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|10842878|gb|BF066239.1|BF066239
EST:     CTGAGTATGCTAAGCAGCTGGGTGAAGAAACATGGGGCAAGCACAATGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAAGAGG-AAGAAGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAA-GAGGGAAGAGGAG
EST: gi|9901583|gb|BE610551.1|BE610551
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|208325996|gb|GE119706.1|GE119706
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGA
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGA
EST: gi|208178857|gb|GD979636.1|GD979636
EST:     CATGGGGCAAGTCTACTAAGGATT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CATGGGGCAAG-C-AC-AAGGA-Tgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193590799|gb|FK545904.1|FK545904
EST:     CTGAGTATGC-AAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAG
EST: gi|208175517|gb|GD973356.1|GD973356
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|7147106|gb|AW509028.1|AW509028
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCANCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193552246|gb|FK508961.1|FK508961
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTAGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTT-GAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193303310|gb|FK272532.1|FK272532
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|208061061|gb|GD859167.1|GD859167
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGGGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193653163|gb|FK599049.1|FK599049
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|17518857|gb|BM187899.1|BM187899
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193513587|gb|FK469161.1|FK469161
EST:     GAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: GAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|24135631|gb|BU926141.1|BU926141
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|13789722|gb|BG652313.1|BG652313
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|207833635|gb|GD807594.1|GD807594
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|207836212|gb|GD807455.1|GD807455
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAA
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAA
EST: gi|193722198|gb|FK660808.1|FK660808
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGTATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|208182798|gb|GD986928.1|GD986928
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193539864|gb|FK493850.1|FK493850
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|12689947|gb|BG156283.1|BG156283
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|21677154|gb|BQ629505.1|BQ629505
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGATAAGGCAGCATTTGAGGAGGCCGAGAATAATAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|5126832|gb|AI748568.1|AI748568
EST:     GCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: GCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|6481781|gb|AW201052.1|AW201052
EST:     TGAGTATGCTAAAGCAGCTG-TTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGGAGCCCGAGA-GAAGANGGAAGAGGAG
genomic: TGAGTATGCTAA-GCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGG-AGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|7029401|gb|AW459184.1|AW459184
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|208053811|gb|GD853094.1|GD853094
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|208261725|gb|GE060500.1|GE060500
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGG
EST: gi|208314951|gb|GE115715.1|GE115715
EST:     CTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|18735107|gb|BM528567.1|BM528567
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAA
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAA
EST: gi|208062621|gb|GD860726.1|GD860726
EST:     GGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: GGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193632834|gb|FK583370.1|FK583370
EST:     GCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: GCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193311642|gb|FK275538.1|FK275538
EST:     CAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193731110|gb|FK664348.1|FK664348
EST:     AACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: AACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|208143744|gb|GD943419.1|GD943419
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193660566|gb|FK601614.1|FK601614
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGAGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|151411454|gb|EV281265.1|EV281265
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|207748503|gb|GD719010.1|GD719010
EST:     TGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         ACTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: TGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|19053178|gb|BM731845.1|BM731845
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193452010|gb|FK418444.1|FK418444
EST:     TGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGTAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGA
genomic: TGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGG-ATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGA
EST: gi|208314836|gb|GE115684.1|GE115684
EST:     GCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: GCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|4290764|gb|AI441665.1|AI441665
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193523662|gb|FK479965.1|FK479965
EST:     GTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: GTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|208330952|gb|GE128557.1|GE128557
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|208125420|gb|GD921080.1|GD921080
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193529726|gb|FK483993.1|FK483993
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193707216|gb|FK644954.1|FK644954
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAG
EST: gi|208332930|gb|GE129125.1|GE129125
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAGGAA
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAGGAA
EST: gi|7234592|gb|AW569928.1|AW569928
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|208223427|gb|GE025764.1|GE025764
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGA
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGA
EST: gi|207690436|gb|GD670548.1|GD670548
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|7146167|gb|AW508152.1|AW508152
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193420306|gb|FK392164.1|FK392164
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|207845925|gb|GD820254.1|GD820254
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|208285399|gb|GE089125.1|GE089125
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGG
EST: gi|207779936|gb|GD753957.1|GD753957
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|208221973|gb|GE017723.1|GE017723
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGA-G
EST: gi|7234631|gb|AW569967.1|AW569967
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|208142791|gb|GD942341.1|GD942341
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|12772505|gb|BG237432.1|BG237432
EST:     CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: CTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
EST: gi|193542794|gb|FK500125.1|FK500125
EST:     GTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT                         GCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
genomic: GTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGATgtaagtcttt ... gttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttggtatgctattgaaagatatgatctccttaatgaaaatgtgttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG
                              ccttaat  putative branch site (score: 4)
                                            tgttctt  putative PPT
                                ttaatgaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtctttctatccactgatcttttggtatgctattgaaagatatgatctccttaatgaaaatgtgttcttgcagGCTGAGAAGGCAGCATTTGAGGAGGCCGAGAAGAAGAGGGAAGAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG