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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggtttgacgtatgagatatagctttcactagaagtacaaaaatatcttcagtaaattagtgtaacaagtcatttccctgtatctaatacagGATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACGTCAGAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAG

Basic information

species Glycine max
transcript GLYMA10G28230.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28230.2 (Glycine max), 3'ss of exon 10
lower sequence: AT3G05910.1 (Arabidopsis thaliana), 3'ss of exon 10
gtggtttgacgtatgagatatagctttc-actagaagtacaaaaatatcttcagtaaattagtgtaacaagtcatttccctgtatctaatacagGATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACGTCAGAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAG
|| |||  |   || | | | |  | |  |||  |      |||  |||   | |  || | | |||    | | |    | | || |  |||||||||||| | || ||||| |  |   | || ||||||||||  ||  | ||||||||||||||||| ||||| || ||||||||||||||| | |||||
gttgttctatagatcataaaaacttgtggacttcaccctttaaagcatc---attgtatcactctaatcgtttaatcttttat-tcgagaacagGATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAG

upper sequence: GLYMA10G28230.2 (Glycine max), 3'ss of exon 10
lower sequence: Vv14s0060g00230.t01 (Vitis vinifera), 3'ss of exon 10
----gtggtttgacgtatgagatatagctttcac--tagaagtacaaaaatatcttcagtaaattagtgtaacaagtcatttccctgta-tctaatacagGATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACGTCAGAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAG
     |  | |      |||         ||||   | |    | ||  | ||  | | | |||   | ||   |   ||||||   |  | |   ||||||||||||||||||||||||||||| || |||||||||||||  ||    || || || || |||||||||||||||||||||||||||||  | |||||
taatataatctctttattgaagctctatgttcatattggccacataatgacattataatttaatctctttattgaagtatttcctaattctttggaacagGATTCAGGAATCAAATGCTGAATGCAATAAAAGGCTTCTCAATGTCTAAACAAAACGGGTTATTCATAAATTCATGTTTTGCTCACTGCCAGACAGAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15663644|gb|BI701015.1|BI701015
EST:     CAGATTAAATCATGCTAAATGTACTTCTTCACAAATCCAATATTTGCAAG                         GATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACGTC
genomic: CAGATTAAATCATGCTAAATGTACTTCTTCACAAATCCAATATTTGCAAGgtggtttgac ... tctaatacagGATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACGTC
EST: gi|15203371|gb|BI426139.1|BI426139
EST:     CAGATTAAATCATGCTAAATGTACTTCTTCACAAATCCAATATTTGCAAG                         GATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACGTC
genomic: CAGATTAAATCATGCTAAATGTACTTCTTCACAAATCCAATATTTGCAAGgtggtttgac ... tctaatacagGATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACGTC
EST: gi|209706964|gb|BW661523.1|BW661523
EST:     CAGATTAAATCATGCTAAATGTACTTCTTCACAAATCCAATATTTGCAAG                         GATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACGTC
genomic: CAGATTAAATCATGCTAAATGTACTTCTTCACAAATCCAATATTTGCAAGgtggtttgac ... tctaatacagGATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACGTC
EST: gi|151393518|gb|EV263393.1|EV263393
EST:     CAGATTAAATCATGCTAAATGTACTTCTTCACAAATCCAATATTTGCAAG                         GATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACGTC
genomic: CAGATTAAATCATGCTAAATGTACTTCTTCACAAATCCAATATTTGCAAGgtggtttgac ... tctaatacagGATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaaatatcttcagtaaattagtgtaacaagtcatttccctgtatctaatacagGATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACGTCAGAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAG
                                            atctaat  putative branch site (score: 3)
             agtaaatta  TA-rich tract